Details of Virus RNA

  Strain Information Strain Name
Japanese encephalitis virus
Strain Family
Flaviviridae
RNA Binding Site
3'UTR
  Virus Information Virus Name
Japanese encephalitis virus (JEV)
Taxonomy ID 11072

Full list of proteins interacting with the 3'UTR of this Strain

Protein Name Uniprot ID Host Species Pro Info Detection Method Infection Cell Cell ID Cell Originated Tissue Infection Time Interaction Score Fold Change
Lupus La protein P05455 Homo sapiens Pro Info Electrophoretic mobility shift (EMSA) and UV cross-linking (UVX) assays, as well as a yeast three-hybrid (Y3H) system HEK293 Cells (Human embryonic kidney cell); Mesc cells (Embryonic stem cell) . Kidney 24 h . .

Virus RNA Sequence Information

>NC_001437.1 Japanese encephalitis virus, genome AGAAGTTTATCTGTGTGAACTTCTTGGCTTAGTATCGTTGAGAAGAATCGAGAGATTAGTGCAGTTTAAA CAGTTTTTTAGAACGGAAGATAACCATGACTAAAAAACCAGGAGGGCCCGGTAAAAACCGGGCTATCAAT ATGCTGAAACGCGGCCTACCCCGCGTATTCCCACTAGTGGGAGTGAAGAGGGTAGTAATGAGCTTGTTGG ACGGCAGAGGGCCAGTACGTTTCGTGCTGGCTCTTATCACGTTCTTCAAGTTTACAGCATTAGCCCCGAC CAAGGCGCTTTTAGGCCGATGGAAAGCAGTGGAAAAGAGTGTGGCAATGAAACATCTTACTAGTTTCAAA CGAGAACTTGGAACACTCATTGACGCCGTGAACAAGCGGGGCAGAAAACAAAACAAAAGAGGAGGAAATG AAGGCTCAATCATGTGGCTCGCAAGCTTGGCAGTTGTCATAGCTTACGCAGGAGCAATGAAGTTGTCGAA TTTCCAGGGGAAGCTTTTGATGACCATCAACAACACGGACATTGCAGACGTTATCGTGATTCCCACCTCA AAAGGAGAGAACAGATGCTGGGTCCGGGCAATAGACGTCGGCTACATGTGTGAGGACACTATCACGTACG AATGTCCTAAGCTCACCATGGGCAATGATCCAGAGGATGTGGATTGCTGGTGTGACAACCAAGAAGTCTA CGTCCAATATGGACGGTGCACGCGGACCAGGCATTCCAAGCGAAGCAGGAGATCCGTGTCGGTCCAAACA CATGGGGAGAGTTCACTAGTGAATAAAAAAGAGGCTTGGCTGGATTCAACGAAAGCCACACGGTATCTCA TGAAAACTGAGAACTGGATCATAAGGAATCCTGGCTATGCTTTCCTGGCGGCGACACTTGGCTGGATGCT TGGCAGTAACAACGGTCAACGCGTGGTATTTACCATCCTCCTGCTGTTGGTCGCTCCGGCTTACAGTTTT AATTGTCTGGGAATGGGCAATCGTGACTTCATAGAAGGAGCCAGTGGAGCCACTTGGGTGGACTTGGTGC TAGAAGGAGATAGCTGCTTGACAATCATGGCAAACGACAAACCAACATTGGACGTCCGCATGATTAACAT CGAAGCTAGCCAACTTGCTGAGGTCAGAAGTTACTGCTATCATGCTTCAGTCACTGACATCTCGACGGTG GCTCGGTGCCCCACGACTGGAGAAGCTCACAACGAGAAGCGAGCTGATAGTAGCTATGTGTGCAAACAAG GCTTCACTGATCGTGGGTGGGGCAACGGATGTGGACTTTTCGGGAAGGGAAGCATTGACACATGTGCAAA ATTCTCCTGCACCAGCAAAGCGATTGGAAGAACAATCCAGCCAGAAAACATCAAATACGAAGTTGGCATT TTTGTGCATGGAACCACCACTTCGGAAAACCATGGGAATTATTCAGCGCAAGTTGGGGCGTCCCAGGCGG CAAAGTTTACAATAACACCCAATGCTCCTTCGATAACCCTCAAACTTGGTGACTACGGAGAAGTCACGCT GGACTGTGAGCCAAGGAGTGGACTGAACACTGAAGCGTTTTACGTCATGACCGTGGGGTCAAAGTCATTT CTGGTCCATAGGGAATGGTTTCATGACCTCGCTCTCCCCTGGACGTCCCCTTCGAGCACAGCGTGGAGAA ACAGAGAACTCCTCATGGAATTTGAAGAGGCGCACGCCACAAAACAGTCCGTTGTTGCTCTTGGGTCACA GGAAGGAGGCCTCCATCAGGCGTTGGCAGGAGCCATCGTGGTGGAGTACTCAAGCTCAGTGAAGTTAACA TCAGGCCACCTGAAATGTAGGCTGAAAATGGACAAACTGGCTCTGAAAGGCACAACCTATGGCATGTGTA CAGAAAAATTCTCGTTCGCGAAAAATCCGGCGGACACTGGCCACGGAACAGTTGTCATTGAACTATCCTA CTCTGGGAGTGATGGCCCCTGCAAAATTCCGATTGTCTCCGTTGCGAGCCTCAATGACATGACCCCCGTT GGGCGGCTGGTGACAGTGAACCCTTTCGTCGCGACTTCCAGTGCCAACTCAAAGGTGCTGGTCGAGATGG AACCCCCCTTCGGAGACTCCTACATCGTGGTTGGGAGGGGAGACAAGCAGATCAACCACCATTGGCACAA AGCTGGAAGCACGCTAGGCAAGGCCTTTTCAACAACTTTGAAGGGAGCTCAAAGACTGGCAGCGTTGGGC GACACAGCCTGGGACTTTGGCTCCATTGGAGGGGTCTTCAACTCCATAGGAAAAGCCGTTCACCAAGTGT TTGGTGGTGCCTTCAGAACACTCTTTGGGGGAATGTCTTGGATCACACAAGGGCTAATGGGTGCCCTACT ACTCTGGATGGGCGTCAACGCACGAGACCGATCAATTGCTTTGGCCTTCTTAGCCACAGGAGGTGTGCTC GTGTTCTTAGCGACCAATGTGCATGCTGACACTGGATGTGCCATTGACATCACAAGAAAAGAGATGAGAT GTGGAAGTGGCATCTTTGTGCACAACGACGTGGAAGCCTGGGTGGACAGGTATAAATACTTGCCAGAAAC GCCCAGATCCCTAGCGAAGATCGTCCACAAAGCGCACAAGGAAGGCGTGTGCGGAGTCAGATCTGTCACT AGATTGGAGCACCAAATGTGGGAAGCCGTACGGGACGAATTGAACGTCCTGCTCAAAGAGAATGCAGTGG ACCTCAGTGTGGTTGTGAACAAGCCCGTGGGAAGATATCGCTCAGCCCCTAAACGCCTATCCATGACGCA AGAGAAGTTTGAAATGGGCTGGAAAGCATGGGGAAAAAGCATTCTCTTTGCCCCGGAATTGGCTAACTCC ACATTTGTCGTAGATGGACCTGAGACAAAGGAATGCCCTGATGAGCATAGAGCTTGGAACAGCATGCAAA TCGAAGACTTCGGCTTTGGCATCACATCAACCCGTGTGTGGCTGAAAATTAGAGAGGAGAGCACTGACGA GTGTGATGGAGCGATCATAGGCACGGCTGTCAAAGGACATGTGGCAGTCCATAGTGACTTGTCGTACTGG ATTGAGAGTCGCTACAACGACACATGGAAACTTGAGAGGGCAGTCTTTGGAGAGGTCAAATCTTGCACTT GGCCAGAGACACACACCCTTTGGGGAGATGGTGTTGAGGAAAGTGAACTCATCATTCCGCATACCATAGC CGGACCAAAAAGCAAGCACAATCGGAGGGAAGGGTATAAGACACAAAACCAGGGACCTTGGGATGAGAAT GGCATAGTCTTGGACTTTGACTATTGCCCAGGGACGAAAGTCACCATTACAGAGGACTGTGGCAAGAGAG GCCCTTCGGTCAGAACCACTACTGACAGTGGAAAGTTGATTACTGACTGGTGCTGTCGCAGTTGCTCCCT TCCGCCCCTACGATTCCGGACAGAAAATGGCTGCTGGTACGGAATGGAAATCAGACCTGTCAGGCATGAT GAAACAACACTCGTTAGATCACAGGTTGATGCTTTCAATGGTGAAATGGTTGACCCTTTTCAGCTGGGCC TTCTGGTGATGTTTCTGGCCACCCAGGAGGTCCTTCGCAAGAGGTGGACGGCCAGATTGACCATTCCTGC GGTTTTGGGGGCCCTACTTGTGCTGATGCTTGGGGGCATCACTTACACTGATTTGGCGAGGTATGTGGTG CTAGTCGCTGCCGCTTTCGCAGAGGCCAACAGTGGAGGAGACGTCCTGCATCTTGCTTTGATTGCCGTTT TTAAGATCCAACCAGCGTTTCTAGTGATGAACATGCTTAGCACGAGATGGACGAACCAAGAAAACGTGGT CCTGGTCCTAGGGGCTGCCTTGTTTCAACTGGCCTCAGTAGATCTGCAAATAGGAGTCCACGGAATCCTG AATGCCGCCGCTATAGCATGGATGATTGTCCGAGCGATCACCTTCCCCACAACCTCCTCCGTCACCATGC CAGTCTTAGCGCTTCTAACCCCGGGAATGAGGGCTCTATACCTAGACACTTACAGAATCATCCTCCTCGT CATAGGGATTTGCTCCCTGCTGCAAGAGAGGAAAAAGACCATGGCAAAAAAGAAAGGAGCTGTACTCTTG GGCTTAGCGCTCACATCCACTGGATGGTTCTCGCCCACCACTATAGCTGCCGGACTAATGGTCTGCAACC CAAACAAGAAGAGAGGGTGGCCAGCCACTGAGTTTTTGTCGGCAGTTGGATTGATGTTTGCCATCGTAGG TGGCTTGGCCGAGTTGGATATTGAATCCATGTCAATACCCTTCATGCTGGCAGGTCTCATGGCAGTGTCC TACGTGGTGTCAGGAAAAGCAACAGATATGTGGCTTGAACGGGCCGCCGACATCAGCTGGGAGATGGATG CTGCAATCACAGGAAGTAGTCGGAGGCTGGATGTGAAACTGGATGATGACGGAGATTTTCACTTGATTGA TGATCCCGGTGTTCCATGGAAGGTCTGGGTCCTGCGCATGTCTTGTATTGGCTTAGCCGCCCTCACGCCT TGGGCCATCGTTCCCGCCGCTTTCGGTTATTGGCTCACTTTAAAAACAACAAAAAGAGGGGGCGTGTTTT GGGACACGCCATCCCCAAAACCTTGCTCAAAAGGAGACACTACTACAGGAGTCTACCGAATTATGGCTAG AGGGATTCTTGGCACTTACCAGGCCGGCGTCGGAGTCATGTACGAGAATGTTTTCCACACACTATGGCAC ACAACTAGAGGAGCAGCCATTATGAGTGGAGAAGGAAAATTGACGCCATACTGGGGTAGTGTGAAAGAAG ACCGCATAGCTTACGGAGGCCCATGGAGGTTTGACCGAAAATGGAATGGAACAGATGACGTGCAAGTGAT CGTGGTAGAACCGGGGAAGGCTGCAGTAAACATCCAGACAAAACCAGGAGTGTTTCGGACTCCCTTCGGG GAGGTTGGGGCTGTTAGTCTGGATTACCCGCGAGGAACATCCGGCTCACCCATTCTGGATTCTAATGGAG ACATCATAGGCCTATACGGCAATGGAGTTGAGCTTGGCGATGGCTCATACGTCAGCGCCATCGTGCAGGG TGACCGTCAGGAGGAACCAGTCCCAGAAGCTTACACCCCAAACATGTTGAGAAAGAGACAGATGACTGTG CTAGATTTGCACCCTGGCTCAGGGAAGACCAGGAAAATTCTGCCACAGATAATCAAGGACGCCATCCAGC AGCGCCTAAGAACAGCTGTGCTGGCACCGACGCGGGTGGTAGCAGCAGAAATGGCAGAAGCTTTGAGAGG GCTCCCAGTGCGATATCAAACTTCAGCAGTGCAGAGAGAGCACCAAGGGAATGAAATAGTGGATGTGATG TGCCACGCCACTCTGACCCATAGACTGATGTCACCGAACAGAGTGCCCAACTACAACCTATTTGTCATGG ATGAAGCTCATTTCACTGACCCAGCCAGCATAGCCGCACGAGGATACATTGCTACCAAGGTGGAATTAGG GGAGGCAGCAGCCATCTTCATGACAGCGACCCCGCCTGGAACCACGGATCCTTTTCCTGACTCAAATGCC CCAATCCATGATTTGCAAGATGAGATACCAGACAGGGCATGGAGCAGTGGATACGAATGGATCACAGAAT ATGCGGGCAAAACCGTGTGGTTTGTGGCGAGCGTAAAAATGGGGAATGAGATTGCAATGTGCCTCCAAAG AGCGGGGAAAAAGGTCATCCAACTCAACCGCAAGTCCTATGATACAGAATACCCAAAATGTAAGAATGGA GACTGGGACTTTGTCATTACCACCGACATCTCTGAAATGGGGGCCAACTTCGGTGCGAGCAGGGTCATCG ACTGTAGAAAGAGCGTGAAACCCACCATCTTAGAAGAGGGAGAAGGCAGAGTCATCCTCGGAAACCCATC TCCCATAACCAGTGCAAGCGCAGCTCAACGGAGGGGCAGAGTAGGCAGAAACCCCAACCAAGTTGGAGAT GAATATCACTATGGGGGGGCTACCAGTGAAGATGACAGTAACCTAGCCCATTGGACAGAGGCAAAGATCA TGTTAGACAACATACACATGCCCAATGGACTGGTGGCCCAGCTCTATGGACCAGAGAGGGAAAAGGCTTT TACAATGGATGGTGAATACCGTCTCAGAGGTGAAGAAAAGAAAAACTTCTTGGAGCTGCTTAGGACGGCT GACCTCCCGGTGTGGCTGGCCTACAAGGTGGCGTCCAATGGCATTCAGTACACCGACAGAAGGTGGTGTT TTGATGGGCCGCGCACGAATGCCATACTGGAGGACAACACCGAGGTAGAGATAGTCACCCGGATGGGTGA GAGGAAAATCCTCAAGCCGAGATGGCTTGATGCAAGAGTTTATGCAGATCACCAAGCCCTCAAGTGGTTC AAAGACTTTGCAGCAGGGAAGAGATCAGCCATTAGCTTCATAGAGGTGCTCGGTCGCATGCCTGAGCATT TCATGGGAAAGACGCGGGAAGCTTTAGACACCATGTACTTGGTTGCAACGGCTGAGAAAGGCGGGAAAGC ACACCGAATGGCTCTCGAAGAGCTGCCAGATGCACTGGAAACCATCACACTTATTGTTGCCATTACTGTG ATGACAGGAGGATTCTTCCTACTAATGATGCAGCGAAAGGGTATAGGGAAGATGGGTCTTGGAGCTCTGG TGCTCACGCTAGCTACCTTCTTCCTGTGGGCGGCAGAGGTTCCTGGAACTAAAATAGCAGGGACCCTGCT GATCGCCCTGCTGCTGATGGTGGTGCTCATCCCAGAACCGGAAAAACAGAGGTCACAGACAGATAACCAA CTGGCGGTGTTTCTCATCTGCGTCTTGACCGTGGTTGGAGTGGTGGCAGCAAACGAGTACGGGATGCTAG AGAAAACCAAAGCAGATCTCAAGAGCATGTTTGTCGGAAAGACGCAGGCATCAGGGCTGACTGGATTGCC AAGCATGGCACTGGACCTGCGTCCAGCCACAGCCTGGGCACTGTATGGGGGGAGCACAGTCGTGCTAACC CCTCTTCTGAAACACCTGATCACGTCGGAATACGTCACCACATCGCTAGCCTCAATTAACTCACAAGCTG GCTCATTATTCGTCTTGCCACGAGGCGTGCCTTTTACCGACCTAGACTTGACCGTTGGCCTCGTCTTCCT TGGCTGTTGGGGTCAAATCACCCTTACAACGTTTCTGACAGCCATGGTTCTGGCGACACTTCATTATGGG TACATGCTCCCTGGATGGCAAGCAGAAGCACTCAGGGCTGCCCAGAGAAGGACAGCGGCTGGAATAATGA AGAATGCCGTTGTTGACGGAATGGTCGCCACTGATGTGCCTGAACTGGAAAGGACCACCCCTCTGATGCA AAAGAAAGTCGGACAGGTGCTCCTCATAGGGGTAAGCGTAGCAGCGTTCCTCGTCAACCCTAATGTCACC ACTGTGAGAGAAGCAGGGGTATTGGTGACGGCGGCTACGCTCACTTTGTGGGACAATGGAGCCAGTGCCG TCTGGAATTCCACCACAGCCACGGGACTCTGCCATGTTATGCGAGGTAGCTACCTGGCTGGAGGTTCCAT TGCTTGGACTCTCATCAAGAACGCGGATAAGCCCTCCTTGAAAAGGGGAAGGCCCGGGGGCAGGACGCTA GGGGAGCAATGGAAGGAAAAACTAAACGCTATGAGCAGAGAAGAGTTTTTTAAATACCGAAGAGAGGCCA TAATCGAGGTGGACCGCACTGAAGCACGCAGGGCTAGACGTGAAAACAACATAGTGGGAGGACATCCGGT TTCGCGAGGCTCAGCAAAACTCCGTTGGCTCGTGGAGAAAGGATTTGTCTCGCCAATAGGAAAAGTCATT GATCTAGGGTGTGGGCGTGGAGGATGGAGCTACTACGCAGCAACCCTGAAGAAGGTCCAGGAAGTCAGAG GATACACGAAAGGTGGGGCGGGACATGAAGAACCGATGCTCATGCAGAGCTATGGCCGGAATCTGGTCTC CTTGAAAAGTGGAGTGGACGTGTTTTACAAACCTTCAGAACCCAGTGACACCCTGTTCTGTGACATAGGG GAATCCTCTCCAAGTCCAGAAGTAGAAGAACAACGCACACTACGCGTCCTAGAGATGACATCTGACTGGT TGCACCGAGGACCTAGAGAGTTCTGCATAAAAGTTCTCTGCCCTTACATGCCCAAGGTTATAGAAAAAAT GGAAGTTCTGCAGCGCCGCTTCGGAGGTGGGCTAGTGCGTCTCCCCCTGTCCCGGAACTCCAATCACGAG ATGTATTGGGTTAGTGGAGCCGCTGGCAATGTGGTGCACGCTGTGAACATGACCAGCCAGGTACTACTGG GGCGAATGGATCGCACAGTGTGGAGAGGGCCAAAGTATGAGGAAGATGTCAACCTAGGGAGCGGAACAAG AGCCGTGGGAAAGGGAGAAGTCCATAGCAATCAGGAGAAAATCAAGAAGAGAATCCAGAAGCTCAAAGAA GAATTCGCCACAACGTGGCACAAAGACCCTGAGCATCCATACCGCACTTGGACATACCATGGAAGCTATG AAGTGAAGGCTACTGGCTCAGCCAGCTCTCTCGTCAACGGAGTGGTGAAGCTCATGAGCAAACCTTGGGA CGCCATTGCCAACGTCACCACCATGGCCATGACTGACACCACCCCTTTTGGACAGCAAAGAGTCTTCAAG GAGAAAGTTGACACGAAGGCTCCTGAGCCACCAGCTGGAGCCAAGGAAGTGCTCAACGAGACCACCAACT GGCTGTGGGCCCACTTGTCACGGGAAAAAAGACCCCGCTTGTGCACCAAGGAAGAATTTATAAAGAAAGT CAACAGCAACGCGGCTCTTGGAGCAGTGTTCGCTGAACAGAATCAATGGAGCACGGCTCGTGAGGCTGTG GATGACCCGCGGTTCTGGGAGATGGTTGATGAAGAGAGGGAAAACCATCTGCGAGGAGAGTGTCATACAT GTATCTACAACATGATGGGAAAAAGAGAGAAGAAGCCTGGAGAGTTTGGAAAAGCTAAAGGAAGCAGGGC CATTTGGTTCATGTGGCTTGGAGCACGGTATCTAGAGTTTGAAGCTTTGGGGTTCCTGAATGAAGACCAT TGGCTGAGCCGAGAGAATTCAGGAGGTGGAGTGGAAGGCTCAGGCGTCCAAAAGCTGGGATACATCCTCC GTGACATAGCAGGAAAGCAAGGAGGGAAAATGTACGCTGATGACACCGCCGGATGGGACACTAGAATTAC CAGAACTGATTTAGAAAATGAAGCCAAGGTGCTGGAGCTCCTAGACGGTGAACACCGCATGCTCGCTCGA GCCATAATTGAACTGACTTACAGGCACAAAGTGGTCAAGGTCATGAGACCTGCAGCAGAAGGAAAGACCG TAATGGACGTGATATCAAGAGAAGATCAAAGGGGGAGTGGACAGGTGGTCACTTATGCCCTTAACACTTT CACGAACATTGCTGTCCAGCTCGTCAGGCTGATGGAGGCTGAGGGGGTCATTGGACCACAACACTTGGAA CAGCTACCTAGAAAAACCAAGATAGCTGTCAGGACCTGGCTCTTTGAGAATGGAGAGGAGAGAGTGACCA GGATGGCGATCAGCGGAGATGACTGTGTCGTCAAGCCGCTGGATGACAGATTCGCCACAGCCCTCCACTT CCTCAACGCAATGTCAAAGGTCAGAAAAGACATCCAGGAATGGAAGCCTTCGCATGGCTGGCACGACTGG CAGCAAGTTCCCTTCTGCTCTAACCATTTTCAGGAGATTGTGATGAAAGATGGAAGGAGCATAGTTGTCC CGTGCAGAGGACAGGATGAGCTGATAGGCAGGGCTCGCATCTCTCCAGGAGCTGGATGGAATGTGAAGGA CACAGCTTGTCTGGCCAAAGCATATGCACAGATGTGGCTACTCCTATACTTCCATCGTAGGGACTTGCGT CTCATGGCAAATGCGATTTGCTCAGCAGTGCCAGTGGATTGGGTGCCCACAGGCAGGACGTCCTGGTCAA TACACTCGAAAGGAGAGTGGATGACCACGGAAGACATGCTGCAGGTCTGGAACAGAGTCTGGATTGAAGA AAATGAATGGATGATGGACAAGACTCCAATCACAAGCTGGACAGACGTTCCGTATGTGGGAAAGCGTGAG GACATCTGGTGTGGTAGCCTCATCGGAACGCGATCCAGAGCAACCTGGGCTGAGAACATCTATGCGGCGA TAAACCAGGTCAGAGCTGTCATAGGGAAAGAAAATTATGTTGACTACATGACCTCACTCAGGAGATACGA AGACGTCCTGATCCAGGAAGACAGGGTCATCTAGTGTGATTTAAAGTAGAAAAGTAGACTATGTAAATAA TGTAAATGAGAAAATGCATGCATATGGAGTCAGGCCAGCAAAAGCTGCCACCGGATACTGGGTAGACGGT GCTGTCTGCGTCTCAGTCCCAGGAGGACTGGGTTAACAAATCTGACAACAGAAAGTGAGAAAGCCCTCAG AACCGTCTCGGAAGTAGGTCCCTGCTCACTGGAAGTTGAAAGACCAACGTCAGGCCACAAATTTGTGCCA CCCCGCTAGGGGGTGCGGCCTGCGCAGCCCCAGGAGGACTGGGTTACCAAAGCCGTTGAGCCCCCACGGC CCAAGCCTCGTCTAGGATGCAATAGACGAGGTGTAAGGACTAGAGGTTAGAGGAGACCCCGTGGAAACAA CAATATGCGGCCCAAGCCCCCTCGAAGCTGTAGAGGAGGTGGAAGGACTAGAGGTTAGAGGAGACCCCGC ATTTGCATCAAACAGCATATTGACACCTGGGAATAGACTGGGAGATCTTCTGCTCTATCTCAACATCAGC TACTAGGCACAGAGCGCCGAAGTATGTAGCTGGTGGTGAGGAAGAACACAGGATCT
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