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| Strain Information | Strain Name |
Norwalk virus
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| Strain Family |
Caliciviridae
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| RNA Binding Site |
3'UTR
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| Virus Information | Virus Name |
Norwalk virus (NV)
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| Taxonomy ID | 11983 | ||||||||
| GeneBank ID | AF093797 | ||||||||
Full list of proteins interacting with the 3'UTR of this Strain
| Protein Name | Uniprot ID | Host Species | Pro Info | Detection Method | Infection Cell | Cell ID | Cell Originated Tissue | Infection Time | Interaction Score | Fold Change |
|---|---|---|---|---|---|---|---|---|---|---|
| Lupus La protein | P05455 | Homo sapiens | Pro Info | UV cross-linking (UVX) | HeLa Cells (Human cervical carcinoma cell) | . | Cervix | . | . | . |
| Polypyrimidine tract-binding protein 1 | P26599 | Homo sapiens | Pro Info | UV cross-linking (UVX) | HeLa Cells (Human cervical carcinoma cell) | . | Cervix | . | . | . |
Functional Go Enrichment analysis of those proteins interacting with the 3'UTR of this Strain
| GO Term | GO Category | GO ID | Adjusted P-value | Odds Ratio | Combined Score |
|---|---|---|---|---|---|
| Poly-Pyrimidine Tract Binding | Molecular Function |
GO:0008187
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1.35E-05 | 39950 | 535732.7439 |
| mRNA Binding | Molecular Function |
GO:0003729
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0.000891486 | 39436 | 336258.8636 |
| Sequence-Specific mRNA Binding | Molecular Function |
GO:1990825
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0.003299102 | 1998.8 | 13617.25933 |
| DNA Binding | Molecular Function |
GO:0003677
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0.00395785 | 38308 | 242378.095 |
| poly RNA Binding | Molecular Function |
GO:0008266
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0.00395785 | 951.2857143 | 5821.7173 |
| pre-mRNA Binding | Molecular Function |
GO:0036002
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0.004496665 | 688.5862069 | 4000.606286 |
| Single-Stranded RNA Binding | Molecular Function |
GO:0003727
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0.005093557 | 475.1428571 | 2589.626019 |
| RNA Binding | Molecular Function |
GO:0003723
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0.005093557 | 37178 | 197174.9945 |
| tRNA Binding | Molecular Function |
GO:0000049
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0.005093557 | 398.96 | 2106.42061 |
| Cytoplasmic Stress Granule | Cellular Component |
GO:0010494
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0.045513974 | 265.64 | 1296.720424 |
| Nucleus | Cellular Component |
GO:0005634
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0.091776724 | 31026 | 92745.18545 |
| Intracellular Membrane-Bounded Organelle | Cellular Component |
GO:0043231
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0.091776724 | 29650 | 80171.60186 |
| Nucleolus | Cellular Component |
GO:0005730
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0.091776724 | 24.97142857 | 64.47858177 |
| Nuclear Lumen | Cellular Component |
GO:0031981
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0.091776724 | 24.67137356 | 63.42314699 |
| Intracellular Non-Membrane-Bounded Organelle | Cellular Component |
GO:0043232
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0.115932437 | 15.74874372 | 33.93456932 |
| tRNA Transport | Biological Process |
GO:0051031
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0.005570721 | 4998.5 | 37993.74861 |
| tRNA 3'-End Processing | Biological Process |
GO:0042780
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0.005570721 | 3998.6 | 29664.54247 |
| Protein Localization To Cytoplasmic Stress Granule | Biological Process |
GO:1903608
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0.005570721 | 3332 | 24205.66527 |
| Negative Regulation Of Muscle Cell Differentiation | Biological Process |
GO:0051148
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0.005570721 | 3332 | 24205.66527 |
| ncRNA Export From Nucleus | Biological Process |
GO:0097064
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0.005570721 | 2855.857143 | 20365.3975 |
| Negative Regulation Of RNA Metabolic Process | Biological Process |
GO:0051253
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0.005570721 | 1998.8 | 13617.25933 |
| tRNA 5'-Leader Removal | Biological Process |
GO:0001682
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0.005570721 | 1817 | 12220.65208 |
| Negative Regulation Of mRNA Splicing, Via Spliceosome | Biological Process |
GO:0048025
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0.005570721 | 1537.307692 | 10102.6154 |
| tRNA 5'-End Processing | Biological Process |
GO:0099116
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0.005570721 | 1537.307692 | 10102.6154 |
| Histone mRNA Catabolic Process | Biological Process |
GO:0071044
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0.005570721 | 1537.307692 | 10102.6154 |
| Negative Regulation Of mRNA Processing | Biological Process |
GO:0050686
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0.005570721 | 1427.428571 | 9282.083306 |
| Positive Regulation Of calcineurin-NFAT Signaling Cascade | Biological Process |
GO:0070886
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0.005570721 | 1110 | 6955.671007 |
| Positive Regulation Of Calcineurin-Mediated Signaling | Biological Process |
GO:0106058
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0.005570721 | 1110 | 6955.671007 |
| Negative Regulation Of RNA Splicing | Biological Process |
GO:0033119
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0.005570721 | 1110 | 6955.671007 |
| tRNA Metabolic Process | Biological Process |
GO:0006399
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0.005570721 | 1110 | 6955.671007 |
| Histone mRNA Metabolic Process | Biological Process |
GO:0008334
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0.006208085 | 908 | 5516.475891 |
| Regulation Of Muscle Cell Differentiation | Biological Process |
GO:0051147
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0.006208085 | 868.4782609 | 5239.424378 |
| Positive Regulation Of Dephosphorylation | Biological Process |
GO:0035306
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0.007083811 | 713.2142857 | 4167.853939 |
| Positive Regulation Of Protein Dephosphorylation | Biological Process |
GO:0035307
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0.007473713 | 623.9375 | 3565.583684 |
| Regulation Of calcineurin-NFAT Signaling Cascade | Biological Process |
GO:0070884
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0.007473713 | 605 | 3439.316521 |
Functional KEGG Enrichment analysis of those proteins interacting with the 3'UTR of this Strain
| Pathways | Category | Adjusted P-value | Odds Ratio | Combined Score |
|---|---|---|---|---|
| Systemic lupus erythematosus | KEGG Pathway | 0.013454652 | 148.238806 | 638.6765753 |
Virus RNA Sequence Information
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>AF093797.1 Norwalk virus, complete genome
GTGAATGATGATGGCGTCGAAAGACGTCGTTGCAACTAACGCTTCAAGCACTGGTGACAATAGTAACACA
ATGAAGGATCGCTTTTTAGCGAGACTCAAAAGTTTGGGTAACACCAAGCCCATAAAAATTGAAAACACAC
AAATGGCTCTCGGGCTTCTAAGCCGGGAGCCATCACCATCGCCCAACCGTGACCCTCCTAAACAACAACG
GGACAGGGCACCACGGAGTGTGGCTGAAACCCAACAGGCAATGGGATGGACAGACCCACCCGTTGATCAA
AACCTGCCAACATGGGAGGAGTTGAGCCAGTCTGAGAAGCAGAAAATCATGGCTGAGAATTCAAAGTGGT
TTGATGCTGGTGGTCTAGGTCCTGCCACCTTGCCATCGAATTATTGTCGTGTTCAAGACAACGGTGATGG
TGACCAGCAGGTTAAATGGAGTGCTAAAGATGGTGTCAATCTGGGGGTTGATGCCCTAACAACTGTCCAA
GGCCCCCCATGGAATTTATGCCCACTTCCCCCAGTCGATCAACGCAATAGTGGGGCAGCCAAGGAACCCC
TGATTGGAGATATGATTGAGTTCTATGAAGGGCACATATACCATTATGCCATGTACATAGGTCAGGGGAA
AACAATTGGTGTGCATTCCCCTAGGGCCGCTTTCTCCATACCTAGGATTACCATACACCCAATCGCTGCC
TGGTGGAGGGTATGCTATGTCCCCACCCAGGAACAAAGGCTGAGTTATGACCAACTTAAAGAGCTTGAAA
ATGAACCTTGGCCATATGCAGCTGTTACTAACAACTGCTATGAGTTTTGCTGCAGGATAATGGATCTACA
GGATACGTGGTTGGAGAGGAGATTGGTAACATCAGGTCGCTTCAACCACCCAACTCAGGACTGGTCCAAG
GACACTCCAGACTTCCAGCAAGATAGTAAGTTGGAGGTTGTCCGTGATGCCGTCTTAGCAGCAATTAATG
GCCTGGTCTCACGCCCGTTCAAGAACTTGCTAAATAAGCTTAAACCACTAAATATCCTCAACCTACTGTC
CAACTGTGACTGGACCTTTATGGGCATAGTTGAAACCATAATACTGTTGATGGAACTCTTTGGGGTCTTT
TGGGACCCCCCTGACGTGTCCAACTTCATAGCTTCTCTCCTCCCTGACATGCACCTTCAAGGCCCGGAAG
ACTTGGCCAAAGATCTGATACCACTCATACTGGGTGGGATTGGGTTGGCCATAGGTTTCACTAAGGATAA
AGTGACAAAGGTGATGAAAAGTGCAGTTGATGGTTTGCGTGCAGCTACCCAACTGGGGCAATATGGCCTG
GAAGTCTTCGCAGTCATCAAGAAGTATTTCTTTGGAGGTGATCAGACTGAGAAGACACTTAAAGACATTG
AGGCAGCAGTCATTGATATGGAGGTTATCTCCACGACAGCCATAACGCAACTAGTTAGAGACAAGCAATC
TGCCAGGACTTATATGGCCATACTAGATGCTGAAGAGGAAAAGGCTAGAAAACTATCTGTGAAACACGCT
GACCCCCACGTGGTGTCAACCACCAACGCATTGATTTCACGCATTTCAATGGCACGGTCTGCCCTGGCTA
AGGCACAAGCTGAGTTGACAAACAGGGTTAAGCCAGTGGTGATAATGATGTGTGGCCCTCCTGGTATAGG
CAAGACGAAGGCTGCCGAGTACCTAGCCAAACGGCTTGCCAATGAAATACGCCCAGGTGGGAAAGTTGGT
CTAGTTCCACGTGAAGCTGTCGACCACTGGGACGGTTATCATGGTGAGGAGGTTATGTTGTGGGATGACT
ATGGAATGTCAAAGATAGCAGATGACTGTAACAAACTGCAAGCAATCGCTGATACAGCCCCTTTAACACT
CAACTGTGACCGAATAGAGAAGAAAGGTATGCAGTTCGTGTCAGATGCTATTGTTATAACCACCAACGCC
CCCGGGCCAGCCCCTGTTGACTTTGTCAACTTAGGACCTGTCTGTCGGCGTGTTGACTTCCTAGTCTATT
GCTCCGCCCCAGAAGTCGAACAGGTACGGCGTGTCAGCCCTGGAGATACTGGCGCGCTCAAAGATTGCTT
CAAAGATGATTTCTCTCACCTTAAGATGGAAATTGCACCACAGGGTGGATTTGACAACCAAGGGAACACA
CCATTTGGCAAGGGCACCATGCGTCCCACCACCATAAACAGGCTTTTAATCCAGGCAGTCGCCCTCACCA
TGGAACGCCAGGATGAATTTCAAATGCAAGGACCAACCTATGATTTTGACTCAGACAGGATTTCAGCTTT
CACTAGCCTAGCCAAAGCTAATGGCTTAAGCTTGATTGGTATGGCAAGCCTCGGAAAGAGGCTACGTAGT
GTCAACTCAATCCATGGCCTCAAAAATGCCCTGACTGGTTACACCATCACACCCTGCACCATAAAATGGC
AAGCTAGGTTTTATGACATAGAGTCTGATGGCAATGTGGTCAAGATATGTGAGAACACAAGTGCACAAAC
CCAACGCCAACAGTCCATTGACACCGCTGTCCTCGCGCTCACCCGGCTCAGGGCTGCCAGGGCTGCCGCA
TATGCATCTTGTCTGCAATGTGCCATCACGACTGTGTTGCAGATGGCGGGTTCAGCTCTTGTCATACACC
GAGCCGTCAAGCGTATGTTCGGCACCCACACTAATGCCGTCTCCTTAGAGGGTCCTGACAGGGAACACCG
CTGTCGAGTGCATCAGGCTAAGGCTAATGGTCGTGGCCCCATTGGACATGATGATGTTATAGAAAAGTAT
GGGCTGTGTGAAACAGAAGATGAGGGCACCCAAGAGCAAGAAGCCACCATTGAATTGCCCACTGCAAGCC
ATGAAGGCAAGAACAAAGGGAAAACCAAAAAGGGCCGAGGCCGAAAAGCCAATTACAATGCCTTCTCTAG
ACGTGGTCTCAATGATGAGGAGTACGAGGAGTCCAGAAGATTAGAGAAGGAAAAAGGTGGAAATTACAGC
ATCCAAGAATACCTTGAAGACAGGCAGCGCTATGAGGAGGAGATGGCTGAAGTGCAGGCCGGCGGCGATG
GTGGAATAGGTGAGACAGAGATGGAGATACGCCATCGAGTCTTCTTTAAGTCCAAGACAAAGAGAAACCG
TCAGGAAGAACGTCGGCAGCTTGGCTTGGTTACAGGCAGTGAGATAAGGAAGAGAAAACCTATAGATTGG
ACCCCCCCCAAAAATGAATGGGCAGATGACGACAGAGAGGTGGACTACACTGAAAAAATAAACTTTGAAG
CCCCTCCCACCATGTGGAGCCGAGTCACCCGATTCGGCTCCGGATGGGGGTTCTGGGTCAGCCCTACAGT
GTTCATTACTACTACCCATGTTATACCAATTGGGGCCAAAGAATTCTTTGGGGAACCATTGGATTCCATT
GCCATACACCGTGCAGGAGAGTTCACACAGTTCCGTTTCTCAAGGAAGATACGGCCAGATCTAACAGGGA
TGGTTCTTGAGGAAGGGTGTCCTGAAGGGGTGGTTTGCTCGATCTTGATCAAGCGTGATTCAGGTGAGCT
GCTACCATTGGCTGTGCGTATGGGGGCTGTGGCTTCAATGAAGATACAGGGTCGGTTGGTCCATGGTCAG
TCGGGTATGCTCCTGACTGGTGCCAATGCAAAAGGAATGGATCTCGGCACTCTCCCAGGTGATTGTGGTG
CACCCTATGTCTACAAGAGAAACAATGATTGGGTTGTTTGCGGTGTCCACGCAGCAGCCACCAAGTCAGG
CAACACTGTGGTCTGTGCAGTGCAGGCAGGTGAGGGGGAGACCACTCTAGAAGGAGGTGACAAGGGTCAT
TATGCTGGGCACGAAATAGTCAGGAACAGTAAGGGCCCTGCACTCTCATCTAAAACTAAATTCTGGAGAT
CAACACCAGAACCCCTACCCCCAGGTGTCTATGAACCAGCTTACCTAGGAGGAAAAGACCCTAGAGTCAA
GGGTGGCCCTTCTTTATATCAAGTCCTTCGGGACCAACTGAAACCTTTTGCTGAGCCACGTGGGCGCATG
CCAGAGCCAGGTTTACTGGAGGCTGCTGTTGAGACAGTGACTTCTATGCTGGAACAGGTTATGGACACGC
CCACGCCCTGGTCATATGCTGATGCTTGCCAGTCATTAGACAAGACCACTAGTTCTGGATACCCCTACCA
TAAGAGAAAGAATGATGATTGGAATGGCACCACCTTTGTGGGAGAACTTGGTGAGCAAGCAGCCCACGCA
AACAACATGTATGAGCTAGGTAAGTCCATGAAGCCCCTATATACAGCAGCCCTCAAAGATGAACTTGTCA
AACCAGAGAAGATCTATCAAAAAATTAAGAAAAGGTTACTCTGGGGGGCTGACCTGTCAACCGTCATACG
ATCTGCACGGGCTTTTGGCCCCTTCTGTGACGCCATAAAGTCCCATGTAATCAAGTTGCCTATTAAAGTT
GGTATGAATTCAATTGAGGATGGCCCCCTAATCTATGCTGAACATGCAAAATATAAGAATCACTTTGATG
CGGATTACTCAGCTTGGGACTCAACACAAAATAGGCAAATTATGATGGAGTCTTTCTCAATCATGTGCCG
CCTCACCGCCTCACCAGATTTGGCGGCTGTTGTGGCTAGAGACCTACTAGCCCCTTCCGAAATGGATGTG
GGAGATTTTGTAATAAGGGTTAAGGAGGGTCTCCCATCAGGCTTCCCCTGTACTTCACAAGTCAATAGCA
TAAATCATTGGCTCATTACATTGTGTGCCTTGTCTGAGGTCACGGGCTTGGCACCCGATGTTATACAATC
ACAGTCATATTTCTCCTTCTATGGGGACGATGAGATCGTGTCCACAGACATTGATTTTGACCCGGCTCGA
CTCACCCAGGTCCTTAGGGAGTATGGACTGCGTCCAACTCGCCCAGATAAAAGTGAGGGCCCCATAATCT
TGAGGAAAAATGTTGATGGCTTGGTATTCCTTAGGCGCACTATCTCCAAGGATGCAGCTGGTTACCAGGG
CCGATTGGATAGAAACTCCATAGAAAGACAGCTATGGTGGACTCGTGGCCCCAATCATGATGACCCAAAT
GAGACGCTCATTCCCCACCCCCAAAGAAAGATCCAACTTATATCACTGCTGGGAGAGGCATCACTTCATG
GGGAAAAGTTTTACAGGAAAATTTCAGGTAGAGTCATCCAAGAGATCAAGACAGGTGGACTGGAAATGTA
TGTGCCAGGCTGGCAGGCCATGTTCCGCTGGATGCGTTTTCATGACCTTGGACTTTGGACAGGAGATCGC
GATCTCCTGCCCGAATTCGTAAATGATGATGGCGTCTAAGGACGCCCCACCATCGCCTGATGGCGCCAGT
GGCGCTGGCCAGCTAGTGCCGGAGGTTAATACAGCTGACCAAATTTCAATGGATCCTGTTGCGGGTGCTT
CTACCGCAGTTGCAACAGCTGGGCAAGTTAATATGATTGATCCATGGATATTCAACAATTTTGTCCAGGC
CCCCCAGGGTGAATTTACCATTTCTCCAAATAATACCCCCGGTGATATTTTATTTGATTTACAATTGGGC
CCCCACTTGAATCCTTTCTTAGCTCATTTATCACAGATGTACAATGGATGGGTTGGCAATATGCGGGTCC
GCATATTGCTGGCAGGCAATGCCTTCACAGCTGGTAAGGTAATCATATGTTGTGTCCCCCCTGGCTTTGA
TGCTAGAATACTTACTATTGCTCAAGCTACCCTATTTCCTCACTTGATTGCTGATGTTAGGACTCTTGAA
CCAGTAGAATTACCTCTCGAGGATGTACGCAATGTCCTCTACCACAATAGCAGCCAGCCACAGCCAACCA
TGCGACTGGTGGCTATGCTATATACCCCATTGCGCACAGGCGGTGGGTCTGGAGGCACTGATGCTTTTGT
GGTTGCTGGGAGAGTTCTGACATGCCCCGCACCAGACTTTAGTTTTCTGTTCCTTGTTCCTCCCTCTGTA
GAGCAAAAGACTAGGGTCTTTAGTGTCCCCAATATACCACTCAAAGATCTCTCAAATTCCCGAGTGCCAA
CCTTGATCCAGGGCATGTTTGTTTCTCCTGATGTCAATCAATCGGTGCAGTTCCAAAATGGGCGATGTCA
AATTGATGGTCAGTTGCAAGGTACCACCCCAGTATCCCTCAGCCAATTATGTAAGATCAGAGGTAGGACT
TCCAGTAATACCAGAGTGCTTAACCTTAGTGAGGTTGACGGGACACCTTTTGTACCACTTGAGTCCCCTG
CACCTGTAGGTTTTCCAGACATAGGCGGGTGTGATTGGCATGTTGGTTTCACTTTTGAGGCACGAGACCA
GGACCCCTCTCAGAATGTGACCTTTGCAACCAATGATTCTAGCTTTGTACCATATCTTGGCAGTATTTCA
CCCCACAATGGTGATGGGTTCCATAGTGGTGACATCATAGGTAGTTTGGATTGGATCTCAGCTCCATCGG
ATGGCTCCGCACTTGATGTATGGTCTATACCAAAGTATGGATCATCTCTTCCAGATGTCACCCATCTGGC
CCCTGCAGTTTTTCCCCCTGGCTTTGGTGAGGTTATCCTTTACTTTCACTCTAAATTTCCTGGTTCTGGC
CCCACTGATAAACTTAGGGTTCCATGTTTGATACCACAAGAGTTTATAACACATTTCTGTAATGAGCAAG
CACCCATAGCGGGGGAGGCTGCCCTCCTTCACTATGTGGACCCTGACACAGGTAGGAACTTAGGGGAATT
CAAGCTTTATCCAGATGGCTTTATGACATGTGTGCCTAACAGCATCAGCAGTGGTCCCCAGACTCTGCCA
ATCAATGGTGTGTTTGTATTTGTGTCCTGGGTATCCAGATTTTACCAACTTAAGCCTGTGGGAACGGCCT
CAGCGGCCAGGAGGCTTGGTCTTCGGCGCATATAATGGCTCAAGCCATCATAGGTGCCATAGCAGCTTCT
GCTGCCGGAAGCATACTCGGTGCTGGCATACAAGCTGGTGCTGAGGCAGGACTCCAAGCCCAACGGTATC
AACAGGATCTCCAACTACAACAGAATACTTTCCAACATGATAGGGAAATGATAGGGTACCAGGTGCAGGC
CAGTAATGCCCTATTGGCTAAGAATCTCAACACTAGATACACTCTACTGCAGGCAGGGGGTTTGTCTAGT
GCGGATGCAGCTAGGGCTGTTGCAGGCGCTCCTGTTACTCGCATAGTGGATTGGAACGGAACCCGTGTGG
CAGCCCCCACATCGAGCGCCACTACTTTAAAATCTGGTGGGTTCATGCCTGTTCCTATACCTTTAACCCA
GAAATCTAAACAACCTTTAATGACTGGGCAAGATAATCCTAACTATGCTGCTTCTTCTATTTCTAGAACT
GCTTCATGGGTGCAATCCCAAAACTCTTTGAGATCTATGCCCCCTTTTCATAATGATGCTCTCCGGACTG
TGTGGGTCACGCCACCTGGTTCGTCTTCTACATCTTCTATGCAGTCTAGTTTCTATGGTGTCTTTAATAC
AGATAGATTACCCCTTTTCGCAAATAGGAGGTAGGGAA
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