Details of Virus RNA

  Strain Information Strain Name
Encephalomyocarditis virus
Strain Family
Cardiovirus a
RNA Binding Site
5'UTR
  Virus Information Virus Name
Encephalomyocarditis virus (EMCV)
Taxonomy ID 12104

Full list of proteins interacting with the 5'UTR of this Strain

Protein Name Uniprot ID Host Species Pro Info Detection Method Infection Cell Cell ID Cell Originated Tissue Infection Time Interaction Score Fold Change
IFIT-5 Q13325 Homo sapiens Pro Info RNA affinity chromatography and mass spectrometry (RAC-MS) HeLa Cells (Human cervical carcinoma cell) . Cervix . . .
Interferon-induced 56 kDa protein P09914 Homo sapiens Pro Info RNA affinity chromatography and mass spectrometry (RAC-MS) HeLa Cells (Human cervical carcinoma cell) . Cervix . . .

Functional Go Enrichment analysis of those proteins interacting with the 5'UTR of this Strain

GO Term GO Category GO ID Adjusted P-value Odds Ratio Combined Score
RNA Cap Binding Molecular Function GO:0000339 0.006662552 1110 6955.671007
poly RNA Binding Molecular Function GO:0008266 0.006662552 951.2857143 5821.7173
Poly-Pyrimidine Tract Binding Molecular Function GO:0008187 0.006662552 832.25 4986.91018
Single-Stranded RNA Binding Molecular Function GO:0003727 0.006791409 475.1428571 2589.626019
RNA Binding Molecular Function GO:0003723 0.006791409 37178 197174.9945
tRNA Binding Molecular Function GO:0000049 0.006791409 398.96 2106.42061
Double-Stranded DNA Binding Molecular Function GO:0003690 0.073080079 29.81355932 81.97926408
DNA Binding Molecular Function GO:0003677 0.082812458 22.66627219 56.46569087
Negative Regulation Of Viral Genome Replication Biological Process GO:0045071 8.48E-05 39894 474158.4148
Negative Regulation Of Viral Process Biological Process GO:0048525 8.48E-05 39878 462655.4184
Regulation Of Viral Genome Replication Biological Process GO:0045069 8.48E-05 39866 454976.3002
Defense Response To Symbiont Biological Process GO:0140546 0.000312744 39704 389866.5282
Defense Response To Virus Biological Process GO:0051607 0.000408621 39622 369624.827
Regulation Of Helicase Activity Biological Process GO:0051095 0.002956482 2855.857143 20365.3975
Response To Type I Interferon Biological Process GO:0034340 0.002956482 2498.75 17524.58157
Cellular Response To Exogenous dsRNA Biological Process GO:0071360 0.00390836 1537.307692 10102.6154
Negative Regulation Of ATP-dependent Activity Biological Process GO:0032780 0.00390836 1332.2 8576.898814
Cellular Response To dsRNA Biological Process GO:0071359 0.00390836 1248.875 7964.758454
Negative Regulation Of Catalytic Activity Biological Process GO:0043086 0.005432874 798.92 4755.879686
Positive Regulation Of Viral Genome Replication Biological Process GO:0045070 0.005554352 713.2142857 4167.853939
Response To Exogenous dsRNA Biological Process GO:0043330 0.006186949 587.1764706 3320.986753
Cellular Response To Type I Interferon Biological Process GO:0071357 0.006236989 539.4864865 3006.932895
Positive Regulation Of Viral Process Biological Process GO:0048524 0.006280289 498.95 2743.118994
Antiviral Innate Immune Response Biological Process GO:0140374 0.006604969 443.4 2386.750614
Negative Regulation Of Protein Binding Biological Process GO:0032091 0.009588958 284.6857143 1409.030276
Negative Regulation Of Binding Biological Process GO:0051100 0.010965417 234.2705882 1114.690229
Regulation Of Protein Binding Biological Process GO:0043393 0.014242291 169.9230769 754.899365
Positive Regulation Of I-kappaB kinase/NF-kappaB Signaling Biological Process GO:0043123 0.020037292 113.9310345 461.411814

Functional KEGG Enrichment analysis of those proteins interacting with the 5'UTR of this Strain

Pathways Category Adjusted P-value Odds Ratio Combined Score
Hepatitis C KEGG Pathway 0.015638636 127.1923077 528.8669878

Virus RNA Sequence Information

>NC_001479.1 Encephalomyocarditis virus, complete genome TTGAAAGCCGGGGGTGGGAGATCCGGATTGCCAGTCTGCTCGATATCGCAGGCTGGGTCCGTGACTACCC ACTCCCCCTTTCAACGTGAAGGCTACGATAGTGCCAGGGCGGGTACTGCCGTAAGTGCCACCCCAAAATA ACAACAGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCCCTCCCCCCCCCC TAACGTTACTGGCCGAAGCCGCTTGGAATAAGGCCGGTGTGCGTTTGTCTATATGTTATTTTCCACCATA TTGCCGTCTTTTGGCAATGTGAGGGCCCGGAAACCTGGCCCTGTCTTCTTGACGAGCATTCCTAGGGGTC TTTCCCCTCTCGCCAAAGGAATGCAAGGTCTGTTGAATGTCGTGAAGGAAGCAGTTCCTCTGGAAGCTTC TTGAAGACAAACAACGTCTGTAGCGACCCTTTGCAGGCAGCGGAACCCCCCACCTGGCGACAGGTGCCTC TGCGGCCAAAAGCCACGTGTATAAGATACACCTGCAAAGGCGGCACAACCCCAGTGCCACGTTGTGAGTT GGATAGTTGTGGAAAGAGTCAAATGGCTCTCCTCAAGCGTATTCAACAAGGGGCTGAAGGATGCCCAGAA GGTACCCCATTGTATGGGATCTGATCTGGGGCCTCGGTGCACATGCTTTACATGTGTTTAGTCGAGGTTA AAAAACGTCTAGGCCCCCCGAACCACGGGGACGTGGTTTTCCTTTGAAAAACACGATGATAATATGGCCA CAACCATGGAACAAGAGACTTGCGCGCACTCTCTCACTTTTGAGGAATGCCCAAAATGCTCTGCTCTACA ATACCGTAATGGATTTTACCTGCTAAAGTATGATGAAGAATGGTACCCAGAGGAGTTATTGACTGATGGA GAGGATGATGTCTTTGATCCCGAATTAGACATGGAAGTCGTTTTCGAGTTACAGGGCAATTCCACCTCCT CAGACAAGAATAACTCCTCCTCGGAAGGCAATGAAGGTGTGATCATCAATAACTTTTACTCCAACCAATA TCAAAACTCCATTGACCTCTCTGCTAATGCAGCCGGGTCTGACCCACCCAGAACCTACGGTCAATTTTCG AATCTCTTTTCGGGCGCAGTGAATGCCTTTTCTAATATGCTTCCATTGCTAGCTGATCAAAATACAGAAG AAATGGAGAATCTGTCTGATCGAGTGTCTCAAGACACTGCCGGCAATACGGTCACAAACACCCAGTCAAC AGTGGGCCGTCTTGTCGGTTATGGTACCGTTCATGATGGAGAGCATCCGGCATCATGTGCTGACACTGCT TCAGAAAAGATCCTGGCGGTGGAAAGGTACTACACCTTCAAGGTTAATGATTGGACATCAACACAAAAGC CCTTTGAGTACATCCGCATTCCCCTTCCTCACGTCCTGTCCGGTGAAGATGGTGGTGTCTTTGGTGCGGC CCTCCGCCGGCACTACCTGGTGAAAACTGGATGGCGGGTGCAAGTTCAGTGCAACGCCTCTCAATTCCAC GCTGGAGGTTTGCTGGTGTTCATGGCACCAGAGTATCCAACCTTAGATGCTTTTGCCATGGACAACCGTT GGTCCAAGGATAACCTGCCTAATGGAACCAGAACTCAGACAAACAAAAAGGGACCATTTGCCATGGACCA TCAGAACTTCTGGCAGTGGACCTTGTATCCCCATCAATTCCTGAATCTGAGAACTAACACCACAGTGGAT CTTGAGGTGCCATATGTAAACATAGCCCCCACTTCCTCCTGGACACAACATGCTTCCTGGACTTTGGTGA TTGCAGTGGTTGCTCCCCTGACATACTCAACCGGGGCTTCTACCAGTTTGGATATCACCGCTTCTATTCA GCCAGTAAGGCCTGTCTTTAATGGCCTCCGGCATGAGACACTTTCTAGACAGTCGCCCATTCCGGTCACA ATTAGAGAACATGCTGGTACCTGGTATTCTACTCTGCCAGACAGCACAGTGCCTATTTATGGCAAGACTC CTGTTGCTCCATCCAATTACATGGTAGGCGAATACAAGGACTTCCTGGAGATAGCTCAGATTCCAACCTT TATTGGGAATAAGATCCCTAATGCTGTCCCCTACATTGAGGCATCCAACACAGCCGTCAAGACCCAACCG CTGGCCACCTATCAAGTGACCTTGTCCTGCTCCTGTCTGGCCAATACATTCTTGGCCGCTTTGTCTAGAA ACTTTGCTCAGTACCGGGGATCATTGGTTTATACCTTTGTGTTCACTGGGACCGCGATGATGAAGGGCAA GTTCCTCATTGCCTACACCCCACCTGGAGCGGGCAAGCCCACTAGTCGAGACCAAGCCATGCAGGCGACT TATGCGATTTGGGATTTGGGGCTAAATTCTTCTTACTCCTTCACTGTGCCTTTTATTTCTCCCACTCACT TCCGCATGGTAGGTACTGACCAAGTCAACATCACTAATGCGGATGGCTGGGTTACCGTGTGGCAGCTCAC TCCCCTCACTTACCCACCAGGATGCCCGACCTCTGCTAAGATACTAACAATGGTGAGCGCAGGGAAGGAT TTCTCACTCAAGATGCCTATCTCACCTGCCCCCTGGAGCCCTCAGGGAGTAGAAAACGCTGAAAAAGGGG TCACTGAAAACACAAACGCAACTGCTGACTTTGTGGCTCAACCAGTTTACTTGCCTGAGAACCAAACGAA GGTGGCTTTCTTCTATAATAGGTCCAGTCCCATTGGTGCCTTCACCGTGAAGTCCGGCAGTCTAGAATCT GGTTTTGCCCCGTTCTCTAATGGGACTTGCCCGAACTCAGTGATACTGACCCCTGGGCCCCAATTTGACC CCGCCTATGACCAACTCAGGCCACAGCGTCTGACAGAAATTTGGGGCAATGGAAATGAGGAGACCTCAAA AGTCTTTCCGCTTAAATCCAAACAGGATTATTCCTTCTGCCTCTTCTCCCCCTTTGTGTATTATAAATGT GATTTAGAAGTGACTCTTAGTCCTCACACTTCAGGCAACCATGGGCTGTTGGTGAGGTGGTGTCCCACTG GTACACCAACCAAGCCCACTACCCAGGTTCTCCATGAAGTAAGTTCCCTCTCAGAAGGCAGAACCCCCCA GGTTTATAGTGCCGGACCTGGCATTTCAAATCAGATTTCCTTTGTAGTTCCTTACAATTCTCCACTTTCA GTCCTATCAGCTGTCTGGTATAATGGACACAAGAGATTTGACAACACTGGGAGCTTGGGCATTGCCCCTA ATTCTGATTTCGGCACTCTGTTCTTTGCTGGCACAAAGCCTGACATTAAATTCACAGTCTACTTGAGATA CAAGAATAAGAGAGTTTTTTGCCCACGTCCGACTGTCTTTTTCCCCTGGCCCACTTCCGGAGACAAGATT GATATGACCCCGAGAGCTGGAGTCTTGATGCTAGAGAGTCCAAATGCCCTAGACATTTCAAGAACATACC CCACGTTACATGTTCTCATTCAATTCAACCATAGAGGTTTGGAGGTTAGATTGTTTAGACATGGACACTT TTGGGCTGAAACACGTGCGGACGTGATTCTGAGATCAAAGACCAAACAGGTCTCTTTCCTGAGCAACGGG AACTACCCGTCAATGGACTCTAGAGCTCCCTGGAATCCTTGGAAGAATACCTACCAGGCGGTTCTAAGAG CAGAACCATGTAGAGTGACCATGGATATATATTATAAGAGAGTCAGGCCTTTTAGACTGCCCCTGGTTCA GAAGGAATGGCCCGTGCGAGAGGAGAACGTTTTCGGTTTGTACCGGATCTTCAATGCCCACTACGCTGGT TACTTTGCGGACCTACTGATTCATGACATTGAGACAAATCCAGGGCCCTTCATGTTTAGACCAAGGAAAC AGGTTTTCCAGACCCAAGGAGCGGCAGTGTCATCAATGGCTCAAACCCTACTGCCGAACGACCTTGCCAG CAAAGCTATGGGATCAGCTTTTACGGCTTTGCTCGATGCCAACGAGGACGCCCAAAAAGCAATGAAGATT ATAAAGACATTAAGTTCTCTATCGGATGCATGGGAAAATGTAAAAGAAACACTAAACAACCCAGAGTTCT GGAAGCAGCTCTTGAGCAGATGTGTGCAGCTGATTGCAGGGATGACAATAGCAGTGATGCATCCGGACCC TTTGACTCTGCTCTGCTTAGGAACATTGACGGCCGCCGAGATTACAAGCCAGACAAGTCTGTGCGAAGAA ATAGCAGCTAAGTTCAAGACAATTTTCATCACTCCTCCACCACGGTTTCCCACAATCTCTCTTTTCCAAC AACAATCCCCCTTGAAACAGGTAAATGATATTTTCTCCCTAGCCAAGAACCTGGACTGGGCCGTCAAGAC TGTGGAAAAGGTGGTTGATTGGTTTGGGACATGGATAGTACAGGAGGAAAAGGAACAGACCCTAGATCAG CTCTTGCAGCGTTTCCCCGAACATGCGAAGCGCATTTCTGATCTCCGGAATGGAATGGCCGCCTATGTAG AGTGCAAGGAGAGTTTTGATTTCTTTGAAAAGCTGTACAATCAGGCAGTGAAAGAGAAGAGAACGGGTAT CGCCGCCGTCTGTGAAAAATTCAGACAGAAGCATGACCACGCCACCGCTCGGTGTGAGCCAGTCGTGATT GTGCTCCGCGGAGACGCGGGGCAAGGGAAATCTTTATCAAGTCAGGTTATTGCCCAGGCCGTCTCCAAGA CCATTTTCGGCCGGCAATCTGTGTATTCCCTTCCCCCCGATTCGGATTTCTTTGATGGCTATGAAAATCA GTTTGCAGCAATAATGGATGATCTAGGGCAAAATCCTGATGGCTCTGATTTCACTACGTTCTGTCAGATG GTTTCGACTACCAATTTTCTCCCCAATATGGCTAGTCTAGAGAGAAAGGGCACCCCCTTTACATCTCAGC TTGTGGTGGCAACTACCAATCTGCCTGAGTTTAGACCTGTCACAATAGCCCATTACCCTGCTGTTGAGAG AAGGATAACTTTCGACTATTCAGTGTCTGCTGGTCCAGTCTGCTCCAAAACAGAGGCCGGGTATAAGGTT TTGGATGTTGAAAGAGCCTTTAGGCCTACCGGTGAGGCTCCTCTTCCATGCTTCCAGAATAACTGCCTTT TCCTTGAGAAAGCTGGGCTCCAGTTCAGAGATAACCGAACTAAAGAGATCATTTCCCTGGTAGATGTGAT TGAGAGAGCCGTGGCTAGGATTGAAAGGAAGAAGAAAGTTCTCACAACCGTGCAGACCCTTGTGGCACAA GGTCCAGTAGACGAGGTCAGTTTCCATTCCGTAGTCCAGCAGCTTAAAGCAAGACAGCAAGCGACAGATG AACAGCTTGAGGAATTGCAAGAGGCTTTCGCGAAAGTACAGGAGCGTAACTCTGTGTTTTCTGATTGGTT GAAGATTTCTGCAATGTTGTGTGCTGCGACTCTGGCACTTTCCCAAGTTGTCAAGATGGCCAAGGCGGTG AAGCAGATGGTCAAGCCTGATCTGGTTCGTGTGCAATTGGATGAGCAGGAGCAGGGACCTTACAATGAGA CAGCGAGAGTTAAACCAAAAACACTGCAGTTGTTGGACATTCAGGGACCAAACCCTGTGATGGACTTTGA AAAATATGTAGCCAAACATGTAACCGCCCCCATTGGTTTTGTCTACCCCACTGGGGTGAGCACCCAGACT TGCCTCCTTGTGAGAGGCCGCACCTTGGTAGTAAATAGACACATGGCCGAGTCTGACTGGACTTCCATAG TAGTGCGTGGAGTCACACACGCCCGCTCTACTGTTAAAATTTTGGCCATAGCTAAAGCAGGCAAAGAGAC TGACGTATCTTTCATCCGCCTCTCTTCTGGTCCTCTATTCAGAGACAATACATCCAAATTTGTCAAGGCT GGTGATGTACTTCCTACTGGTGCCGCTCCAGTCACGGGGATAATGAACACGGACATACCCATGATGTACA CAGGAACCTTCCTGAAAGCTGGTGTGTCAGTCCCAGTGGAAACCGGCCAGACCTTTAATCACTGTATTCA TTACAAGGCTAACACACGAAAGGGCTGGTGTGGATCAGCCCTACTGGCAGATCTTGGAGGAAGCAAGAAA ATCCTTGGCATCCATTCTGCTGGCTCTATGGGAATAGCCGCCGCCTCGATTGTGTCACAGGAGATGATTC GGGCGGTAGTGAATGCCTTTGAGCCACAGGGTGCTCTCGAGAGATTGCCAGATGGGCCCCGTATTCACGT ACCACGTAAAACAGCACTACGCCCCACCGTTGCCCGTCAAGTCTTCCAACCAGCATATGCCCCGGCTGTT CTATCGAAATTTGACCCTAGAACAGAGGCTGATGTAGATGAAGTGGCTTTCTCCAAACATACCTCCAACC AGGAAAGCCTCCCACCAGTGTTTAGAATGGTAGCCAAAGAGTATGCCAATAGAGTTTTCACCTTGCTGGG AAAAGACAATGGCCGTCTGACTGTAAAGCAGGCTTTGGAAGGACTGGAGGGGATGGACCCCATGGACAGG AACACCTCCCCGGGGCTTCCATATACTGCGCTAGGAATGCGCAGAACAGATGTCGTAGATTGGGAATCAG CCACCCTGATCCCGTTTGCGGCAGAAAGATTAAGAAAAATGAATGAAGGAGACTTTTCCGAAGTTGTCTA TCAAACATTCCTCAAGGATGAGCTTAGACCGATAGAGAAGGTTCAAGCCGCCAAGACACGGATTGTAGAT GTTCCACCATTTGAGCATTGCATTCTGGGTAGACAATTGTTGGGAAAGTTTGCATCAAAGTTCCAGACCC AACCGGGTCTGGAACTAGGATCAGCCATTGGATGTGACCCAGATGTACACTGGACTGCCTTCGGTGTCGC CATGCAAGGTTTTGAGCGTGTCTACGATGTGGACTACTCCAACTTTGATTCGACCCATTCGGTGGCAATG TTCCGCTTATTGGCTGAGGAATTTTTCACTCCAGAGAATGGTTTTGACCCCCTGACTAGAGAATATCTTG AGTCATTAGCCATTTCAACCCATGCGTTTGAGGAGAAGCGCTTTCTGATAACCGGTGGTCTCCCATCAGG TTGTGCAGCGACCTCAATGCTAAACACTATAATGAATAATATAATAATTAGGGCGGGTTTGTATCTCACG TATAAAAATTTTGAATTTGATGATGTGAAGGTGTTGTCGTACGGAGATGATCTCCTTGTGGCCACAAATT ACCAATTGGATTTTGATAAGGTGAGAGCAAGCCTCGCAAAGACAGGATATAAGATAACTCCCGCTAACAC AACTTCTACCTTTCCTCTTAATTCGACGCTTGAAGACGTTGTCTTCTTAAAAAGAAAGTTTAAGAAAGAG GGCCCTCTGTATCGGCCTGTCATGAACAGAGAGGCGTTGGAAGCAATGTTGTCATACTATCGTCCAGGGA CTCTATCTGAGAAACTCACTTCGATCACTATGCTTGCCGTTCATTCTGGCAAGCAGGAATATGATCGGCT CTTTGCCCCATTCCGTGAGGTAGGGGTTGTCGTGCCATCATTCGAGAGTGTGGAGTACAGATGGAGGAGT CTGTTCTGGTAGTAGTGTAGTCACTGGCACAACGCGTTACCCGGTAAGCCAATCGGGTATACACGGTCGT CATACTGCAGACAGGGTTCTTCTACTTTGCAAGATAGTCTAGAGTAGTAAAATAAATAGATAGAG
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