Details of Virus RNA
Full list of proteins interacting with the 5'UTR - 3'UTR of this Strain
Protein Name | Uniprot ID | Host Species | Pro Info | Detection Method | Infection Cell | Cell ID | Cell Originated Tissue | Infection Time | Interaction Score | Fold Change |
---|---|---|---|---|---|---|---|---|---|---|
ATP-dependent RNA helicase | A0A1U7R4D1 | Mesocricetus auratus | Pro Info | Mass spectrometry (MS) | BHK-21 Cells (Small hamster kidney fibroblast) | . | Kidney | 1 h | . | . |
ATP-dependent RNA helicase A | Q08211 | Homo sapiens | Pro Info | . | B95a Cells (Marmoset lymphoblastoid cell line) | . | . | . | . | . |
ATP-dependent RNA helicase A | Q08211 | Homo sapiens | Pro Info | . | B95a Cells (Marmoset lymphoblastoid cell line) | . | . | . | . | . |
Elongation factor 2 | P09445 | Cricetulus griseus | Pro Info | Mass spectrometry (MS) | BHK-21 Cells (Small hamster kidney fibroblast) | . | Kidney | 1 h | . | . |
Eukaryotic translation initiation factor 4B | A0A3Q0CFL5 | Mesocricetus auratus | Pro Info | Mass spectrometry (MS) | BHK-21 Cells (Small hamster kidney fibroblast) | . | Kidney | 1 h | . | . |
Gem-associated protein 5 isoform X3 | A0A1U8BHX4 | Mesocricetus auratus | Pro Info | Liquid chromatography-tandem mass spectrometry (LC-MS/MS) | BHK-21 Cells (Small hamster kidney fibroblast) | . | Kidney | 1 h | . | . |
Poly(RC)-binding protein 1 | A0A1U7QFH5 | Mesocricetus auratus | Pro Info | Mass spectrometry (MS) | BHK-21 Cells (Small hamster kidney fibroblast) | . | Kidney | 1 h | . | . |
Poly(RC)-binding protein 2 | A0A3Q0CMK8 | Mesocricetus auratus | Pro Info | Matrix-assisted laser desorption ionization time of flight/time of flight (MALDI-TOF/TOF) | BHK-21 Cells (Small hamster kidney fibroblast) | . | Kidney | 1 h | . | . |
Proliferation associated 2G4 | E7CYH3 | Mesocricetus auratus | Pro Info | Mass spectrometry (MS) | BHK-21 Cells (Small hamster kidney fibroblast) | . | Kidney | 1 h | . | . |
Replication protein A subunit | A0A3Q0CL88 | Mesocricetus auratus | Pro Info | Mass spectrometry (MS) | BHK-21 Cells (Small hamster kidney fibroblast) | . | Kidney | 1 h | . | . |
RNA helicase | A0A1U8BR45 | Mesocricetus auratus | Pro Info | Liquid chromatography-tandem mass spectrometry (LC-MS/MS) | BHK-21 Cells (Small hamster kidney fibroblast) | . | Kidney | 1 h | . | . |
Functional Go Enrichment analysis of those proteins interacting with the 5'UTR - 3'UTR of this Strain
Functional KEGG Enrichment analysis of those proteins interacting with the 5'UTR - 3'UTR of this Strain
Pathways | Category | Adjusted P-value | Odds Ratio | Combined Score |
---|---|---|---|---|
Ferroptosis | KEGG Pathway | 0.001901435 | 146.1684982 | 1290.681803 |
RNA transport | KEGG Pathway | 0.019283743 | 30.75621118 | 179.0102236 |
Mismatch repair | KEGG Pathway | 0.044652679 | 113.4602273 | 519.1007406 |
DNA replication | KEGG Pathway | 0.044652766 | 71.27142857 | 294.3331456 |
Homologous recombination | KEGG Pathway | 0.044652766 | 62.346875 | 249.430818 |
Nucleotide excision repair | KEGG Pathway | 0.044652766 | 54.19836957 | 209.4938923 |
Fanconi anemia pathway | KEGG Pathway | 0.044652766 | 47.02358491 | 175.2981986 |
AMPK signaling pathway | KEGG Pathway | 0.079437364 | 20.87394958 | 61.42226799 |
Spliceosome | KEGG Pathway | 0.079437364 | 16.64597315 | 45.3663003 |
Oxytocin signaling pathway | KEGG Pathway | 0.079437364 | 16.20751634 | 43.75770942 |
mTOR signaling pathway | KEGG Pathway | 0.079437364 | 16.20751634 | 43.75770942 |
Proteoglycans in cancer | KEGG Pathway | 0.095954651 | 12.12438725 | 29.38857258 |
PI3K-Akt signaling pathway | KEGG Pathway | 0.148502463 | 6.953966006 | 13.26228223 |
Virus RNA Sequence Information
>NC_039210.1 Foot-and-mouth disease virus O isolate o6pirbright iso58, complete genome
TTGAAAGGGGGCGCTAGGGTTTCACCCCTAGCACGCCAACGACAGTCCCTGCGTTGCACTCCACACTTAC
GTTCGCGTGCACGCGGGACCCGATGGACTTTCGTTCACCCACCTACGGTTGGACTCACGGCACCGCGTGG
CCATTTTAGCTGGACCGTGTGGACGAACACCGCTTGCGCTTCTCGCGTGACCGGCTAGTACTCTGACCAC
TCTCCGCCTACTTGGTCGCTGCGCTGTCTTGGGCACTCCTATTGGGGTCGTTCGACGCTCCACGGGCTCC
CCCGTGCGGCGGGCTACGGTGATGGGGCCGTTTCGCGCGGGCTGATCGCCTGGTCTGCTTCGGCTGTCAC
CCGAAGCCCGCCTTTCACCCCCCCCCCCCTAAGTTTTACCGTCGTTTCCGACGTAAAGGGGAAGTAACCA
CAAGCTTGACACCGCCTGTCCCGGCGTTAAAGGGAAGTAACCACAAGCTTACAACCGCCTACCCCGGTGT
TAATGGGATGTAACCACAAGATACACCTTCACCCGGAAGTAAAACGGCAAATTCACACAGTTTTGCCCGT
TTTTCATGAGAAACGGGACGTCTGCGCACGAAACGCGCCGTCGCTTGAGGAGGACTTGTACAAACACGAT
CTAAACAGGTTTCCCCAACTGACATACACCGTGCAATTTGAAACTCCGCCTGGTCTTTCCAGGTCTAGAG
GGGTAACACTTTGTACTGTGCTTGACTCCACGCTCGGTCCACTGGCGAGTGTTAGTAACAGCACTGGTGC
TTCGTAGCGGAGCATGGTGGCCGTGGGAACTCCTCCTTGGTAACAAGGACCCACGGGGCCGAAAGCCACG
TCCTGACGGACCCACCATGTGTGCAACCCCAGCACGGCAACTTTTCTGTGAAACTCACTCTAAGGTGACA
CTGATACTGGTATTCAAGTACTGGTGACAGGCTAAGGATGCCCTTCAGGTACCCCGAGGTAACACGCGAC
ACTCGGGATCTGAGAAGGGGACTGGGGCTTCTGTAAAAGCGCCCAGTTTAAAAAGCTTCTATGCCTGGAT
AGGTGACCGGAGGCCGGCGCCTTTCCATTATAACTACTGACTTTATGAACACAACTAACTGTTTTATCGC
TTTGGTGTACGCTATCAGAGAGATCAGAACGCTTTTCCTTTCACGAGCTACAGGAAAGATGGAATTCACG
CTGTACAACGGTGAAAAGAAGACCTTTTACTCCAGGCCCAACAACCACGACAACTGTTGGTTGAACACCA
TCCTTCAGTTGTTCAGGTACGTCGATGAGCCTTTCTTCGACTGGGTCTACAACTCACCCCAGAACCTCAC
GCTTGAAGCCATCAAACAGCTGGAAGAACTCACAGGGCTTGAGTTACACGAAGGCGGACCGCCTGCCGCT
GTTGTTTGGAACATCAAACACTTGCTTCAAACCGGTATTGGTACCGCCTCGCGACCTAGCGAGGTGTGTG
TGGTGGACGGTACGAACATGTGTCTGGCTGATTTCCATGCAGGCATCTTCCTGAAAGGACAGGAACATGC
CGTGTTTGCTTGTGTCACCTCCAACGGGTGGTACGCGATTGACGATGAGGACTTCTACCCATGGACGCCG
GACCCGTCCGACGTTCTGGTGTTCGTTCCATATGATCAAGAACCACTCAACGGAGAATGGAAAATCAACG
TTCAGCGGAAGCTCAAGGGAGCTGGACAATCCAGTCCGGCGACCGGCTCGCAGAACCAATCTGGCAATAC
TGGCAGCATAATCAACAACTACTACATGCAACAGTACCAGAACTCCATGGACACACAACTTGGTGACAAC
GCCATCAGCGGAGGCTCCAACGAGGGCTCCACAGACACAACTTCCAATCACACAACCAACACTCAGAACA
ACGACTGGTTTTCCAAGCTCGCAGGTTCTGCCTTCAGCGGTCTTTTTGGCGCCCTTCTTGCTGACAAAAA
GACAGAGGAAACCACTCTCCTCGAGGACCGCATCCTCACTACCCGCAACGGACACACGACCTCAACAACA
CAGTCGAGTGTCGGAGTCACGTACGGGTATGCAACAGCTGAGGACTTTGTGAGTGGGCCAAACACTTCTG
GTCTTGAAACCAGAGTTGTCCAGGCAGAACGCTTCTTCAAAACCCACCTCTTCGATTGGGTCACCAGTGA
CCCATTCGGACGCTGCCACCTGTTGGAACTCCCAACTGACCACAAAGGTGTCTACGGAAGTCTGACCGAC
TCGTACGCATATATGAGAAACGGTTGGGACGTTGAAGTCACCGCGGTTGGCAACCAGTTCAACGGAGGGT
GTCTGTTGGTGGCGATGGTGCCAGAGCTTTGTTCCATCCAGAAGAGGGAGCTGTACCAGCTCACGCTCTT
CCCCCATCAGTTCATCAACCCACGCACAAACATGACTGCGCACATCACTGTGCCTTTCGTTGGCGTCAAT
CGCTACGACCAGTACAAGGTGCACAAACCTTGGACCCTCGTGGTTATGGTCGTAGCCCCCCTGACTGTCA
ACACTGAAGGCGCTCCACAGATCAAGGTGTACGCCAACATTGCCCCAACCAACGTGTACGTAGCGGGCGA
GTTTCCTTCCAAAGAGGGAATTTTCCCCGTAGCTTGCAGTGACGGCTATGGTGGCCTGGTGACCACGGAC
CCGAAGACGGCTGACCCCGTTTACGGGAAAGTGTTTAACCCCCCACGCAACCTGCTGCCTGGGCGTTTTA
CCAATCTCCTTGATGTGGCTGAGGCATGCCCGACGTTTCTGCACTTCGAGGGTGACGTGCCATACGTGAC
CACGAAAACAGATTCAGACAGGGTGCTTGCCCAGTTTGACGTGTCCTTAGCAGCAAAGCACATGTCGAAC
ACCTTTCTTGCAGGTCTCGCGCAGTACTATGCACAGTACAGTGGCACCATCAACCTGCACTTCATGTTTA
CAGGACCCACTGACGCGAAAGCGCGTTACATGGTTGCTTACGCCCCACCGGGCATGGAGCCGCCCCGGAC
GCCTGAGGCGGCTGCACACTGCATTCATGCTGAGTGGGACACTGGGCTAAACTCAAAGTTCACTTTCTCC
ATCCCCTATCTTTCGGCTGCTGACTACGCATACACCGCGTCAGACGTGGCTGAAACCACGAACGTGCAAG
GATGGGTCTGCTTGTTTCAAATCACGCACGGCAAAGCCGACGGCGACGCTTTGGTCGTGTTGGCTAGCGC
TGGCAAGGACTTTGAGCTGAGGCTGCCGGTCGACGCCCGCAGAGAAACTACCTCTGCGGGTGAATCAGCA
GATCCCGTGACTACCACTGTTGAGAACTACGGTGGTGAGACACAGGTCCAGAGGCGCCAACACACAGACG
TCTCGTTCATCATGGACAGATTCGTGAAAGTGACACCGCAAGATCAAATCAACGTTTTGGACCTTATGCA
GATCCCTGCCCACACGCTGGTGGGAGCGCTCCTGCGCGCGTCCACTTACTACTTCTCTGACCTGGAGATA
GCAGTAAAGCACGAGGGAGACCTCACTTGGGTCCCGAACGGGGCGCCTGAAGCAGCGCTGGAGAACACCA
CCAACCCAACAGCTTACCACAAGGCACCACTCACTCGGCTCGCCCTGCCTTACACGGCACCACACCGCGT
GTTGGCAACCGTGTATAATGGAGTGTGCAAGTACAGTAAAACTGCTGTGCCCAACGTGAGAGGTGACACC
CAGGTGTTGGATCAGAAGGCGTCGCGGGCGCTACCCACCTCCTTCAACTACGGTGCCATCAAAGCAACCC
GAGTTAACGAGCTACTTTATCGGATGAAGAGGGCTGAGACATACTGTCCCAGGCCCTTGCTGGCTATCCA
TCCAGCCGAAGCCAGACACAAACAGAAAATTGTGGCACCTGTGAAACAGACTTTGAACTTTGACCTTCTC
AAGTTGGCTGGAGACGTGGAGTCCAACCCTGGGCCCTTCTTCTTCTCCGACGTCAGGTCAAATTTCTCCA
AATTGGTAGAAACCATCAACCAGATGCAGGAGGACATCTCGACAAAACACGGGCCTGACTTTAACCGGTT
GGTGTCTGCGTTTGAGGAATTGGCTACTGGAGTGAAAGCAATCAGGACCGGTCTCGACGAGGCCAAACCC
TGGTACAAGCTTATTAAGCTCCTAAGCCGCCTGTCGTGTATGGCCGCTGTGGCAGCACGGTCCAAGGACC
CAGTCCTTGTGGCCATCATGCTGGCCGACACCGGTCTCGAGATTCTGGACAGCACCTTTGTCGTGAAGAA
AATTTCCGATTCGCTCTCCAGTCTCTTTCACGTGCCGGCCCCCGTCTTCAGTTTCGGAGCCCCGATCCTG
TTGGCCGGGTTGGTCAAGGTCGCCTCGAGTTTCTTCCGGTCCACACCCGAAGACCTTGAGAGAGCAGAGA
AACAGCTCAAAGCACGTGACATTAACGACATTTTCGCCGTTCTCAAGAACGGCGAGTGGCTGGTCAAGTT
GATCCTTGCCATCCGCGACTGGATTAAGGCATGGATCGCCTCAGAGGAGAAGTTCGTCACCATGACAGAC
CTGGTGCCTGGTATCCTTGAAAAGCAGCGGGACCTCAACGACCCAAGCAAGTACAAGGAAGCCAAGGAGT
GGCTCGACAACGCGCGCCAAGCGTGTTTGAAGAACGGGAACGTCCACATCGCTAACCTGTGCAAAGTGGT
CGCCCCAGCACCCAGCGAGTCGAGACCCGAACCCGTGGTCGTTTGCCTCCGTGGCAAGTCCGGCCAGGGC
AAGAGTTTCCTTGCGAACGTGCTCGCGCAAGCAATCTCCACTCACTTTACTGGTAGAACCAATTCCGTTT
GGTACTGCCCACCTGACCCTGACCACTTCGACGGCTACAACCAGCAGACCGTTGTAGTGATGGATGACCT
GGGTCAGAACCCCGATGGCAAGGACTTCAAGTACTTCGCCCAAATGGTTTCAACCACGGGGTTCATCCCG
CCCATGGCGTCACTCGAGGACAAAGGCAAACCTTTCAACAGCAAGGTCATCATCGCAACCACCAACCTGT
ACTCGGGTTTTACCCCGAAGACTATGGTGTGCCCTGATGCGCTGAACCGGAGGTTCCACTTTGACATCGA
CGTGAGCGCCAAGGACGGGTACAAAATTAACAACAAACTGGACATCGTCAAAGCACTTGAAGACACTCAC
ACCAACCCGGTAGCAATGTTTCAGTACGACTGTGCCCTTCTCAACGGCACGGCCGTTGAAATGAAGAGAA
TGCAGCAGGACTTGTTCAAGCCTCAACCACCCCTCCAGAACGTGTACCAGCTCGTTCAGGAGGTGATTGA
ACGGGTCGAGCTCCACGAGAAAGTGTCGAGCCACCCGATTTTCAAGCAGATCTCAATTCCTTCCCAAAAA
TCCGTGTTGTACTTCCTCATTGAGAAAGGTCAACACGAGGCGGCAATTGAATTCTTTGAGGGCATGGTGC
ACGACTCCATCAAGGAGGAGCTCCGACCCCTCATCCAACGAACCTCATTTGTGAAACGCGCTTTTAAGCG
TCTGAAGGAAAACTTTGAGACTGTTGCCCTGTGCTTGACCCTCTTGGCCAACATAGTGATCATGATCCGT
GAAACCCACAAGAGGCAGAAGATGGTGGATGGCTCGGTGAATGAGCACATCGAGAAGGCAAACAACACCG
CAGACGATGAAACTCTTGACGAGGCGGGAAAGAACCCTCTGGAAACCAGTGGTGCCAGCACCGTTGGCTT
CAGAGAGAGAACTCTCACGGACCGAAAGGCGCGTGATGACGTGGGCTTCGAGCCCGCATATCCTGCTGAA
GAGTACCCACAAGCTGAAGGACCCTACGCCGGGCCACTCGAGCGTCAGAGACCTCTGAAAGTGAGAGCCA
AGCTCCCACAACAGGAGGGACCCTACGCTGGTCCGATGGAGAGACAGAAACCACTGAAAGTGAAAGTGAA
AAACCCGGTCATTAAGGAAGGACCCTACGAAGGACCGGTGAAGAAGCCTGTCGCTTTGAAAGTGAAAGCC
AAGAACTTAATTGTCACTGAGAGTGGTGCCCCACCGACCGACTTGCAAAAGATGGTCATGGGCAACACAA
AGCCTGTTGAGCTTATCCTTGACGGGAAGACAGTAGCCATCTGCTGTGCTACTGGAGTGTTTGGTACTGC
TTACCTCGTGCCTCGTCACCTTTTTGCAGAGAAGTATGACAAAATCATGTTGGACGGCAGAGCCATGACA
GACAGTGACTACAGAGTGTTTGAGTTTGAGATTAAAGTAAAAGGACAGGACATGCTCTCGGACGCCGCAC
TCATGGTACTCCACCGCGGGAACCGTGTGAGAGACATCACGAAACACTTTCGTGATACAGCAAGAATGAA
GAAAGGCACTCCCGTTGTTGGTGTGATCAACAACGCAGACGTCGGGAGGCTGATTTTCTCTGGTGAGGCC
CTCACCTACAAGGATATCGTAGTGTGCATGGATGGAGATACCATGCCTGGCCTTTTTGCCTATAAGGCCG
CCACCAAGGCCGGTTACTGTGGAGGAGCCGTTCTCGCTAAGGACGGGGCTGACACGTTCATCGTCGGCAC
TCACTCTGCAGGAGGCAATGGAGTAGGATACTGTTCGTGTGTTTCCAGGTCCATGCTTCAAAAGATGAAG
GCACACATTGACCCCGAACCACACCACGAGGGTTTGGTTGTCAACACCAGAGATGTGGAAGAGCGCGTTC
ACGTGATGCGCAAAACCAAGCTTGCACCCACCGTTGCACACGGTGTGTTCAACCCTGACTTTGGGCCTGC
CGCCTTGTCTAACAAGGACCCGCGCCTGAACGAGGGTGTTGTCCTCGATGAAGCCATCTTCTCCAAACAC
AAGGGAGACACAAAGATGTCCGAGGAAGACAAAGCGCTGTTCCGCCGTTGTGCTGCTGACTACGCCTCAC
GCTTGCACAGCGTACTGGGTACAGCAAATGCCCCATTGAGCATCTACGAGGCAATCAAGGGCGTTGATGG
ACTCGACGCCATGGAGCCAGACACTGCGCCTGGCCTCCCCTGGGCACTCCAGGGGAAACGTCGTGGCGCG
CTCATCGATTTTGAGAACGGCACGGTCGGGCCCGAAGTCGAGGCTGCCTTGAAGCTCATGGAGAGAAGAG
AATACAAATTTGTTTGCCAGACCTTCCTGAAGGACGAAATTCGCCCGATGGAGAAAGTACGTGCCGGCAA
GACTCGCATTGTCGACGTTTTGCCCGTTGAACACATTCTTTACACCAGGATGATGATTGGCAGATTCTGT
GCACAAATGCACTCAAACAACGGACCGCAAATTGGCTCAGCAGTCGGTTGTAACCCTGATGTTGATTGGC
AAAGATTTGGCACACACTTCGCCCAATACAGAAACGTGTGGGACGTGGACTACTCGGCCTTCGATGCTAA
CCACTGCAGTGACGCAATGAACATCATGTTTGAGGAAGTGTTCCGCACGGACTTTGGTTTTCACCCAAAT
GCTGAGTGGATCCTGAAGACTCTCGTGAACACGGAACACGCCTATGAAAATAAACGTATCACTGTCGAGG
GCGGGATGCCATCTGGTTGTTCCGCAACAAGCATCATCAACACAATCTTGAACAACATATATGTGCTCTA
CGCCTTGCGTAGACACTATGAGGGAGTTGAGCTGGATACTTACACCATGATCTCATACGGAGACGACATC
GTGGTGGCAAGTGACTACGATTTGGACTTTGAGGCTCTCAAGCCCCACTTTAAATCTCTCGGTCAAACCA
TTACTCCAGCTGACAAAAGCGACAAAGGTTTTGTTCTCGGACATTCCATCACCGATGTCACTTTCCTCAA
AAGACACTTCCACATGGATTATGGAACTGGGTTTTACAAACCTGTGATGGCCTCAAAGACTCTCGAGGCC
ATTCTCTCCTTTGCACGCCGTGGGACCATACAGGAGAAGTTGATCTCCGTGGCAGGACTCGCCGTCCACT
CCGGACCAGACGAGTACCGGCGTCTCTTTGAACCCTTCCAGGGCCTCTTTGAGATTCCAAGCTACAGATC
ACTTTACCTGCGTTGGGTGAACGCCGTGTGCGGTGACGCATAATCCCTCAGAGATCACAATTGGCACAAT
GACTCTGGGGCGCGCGACGCCGTAGGAGTGAAAAGCCCGAAGGGCTTCTCCCGCTTCCTTATCCCAAAAA
AAAAAAAAAAA
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