Details of Virus RNA
Full list of proteins interacting with the 5'UTR - 3'UTR of this Strain
Protein Name | Uniprot ID | Host Species | Pro Info | Detection Method | Infection Cell | Cell ID | Cell Originated Tissue | Infection Time | Interaction Score | Fold Change |
---|---|---|---|---|---|---|---|---|---|---|
DNA dC->dU-editing enzyme APOBEC-3A | P31941 | Homo sapiens | Pro Info | Crosslinking with immunoprecipitation followed by sequencing (CLIP-seq) | HEK293 Cells (Human embryonic kidney cell); Mesc cells (Embryonic stem cell) | . | Kidney | 48 h | . | . |
Interleukin enhancer-binding factor 3 | Q12906 | Homo sapiens | Pro Info | TAR affinity fractionation, North-Western blotting, and mobility-shift assays | HeLa Cells (Human cervical carcinoma cell) | . | Cervix | 44 h | . | . |
Regulator of nonsense transcripts 1 | Q92900 | Homo sapiens | Pro Info | Quantitative fluorescence in situ hybridisation and flow cytometry (flow-FISH) | J-Lat Cells (Human peripheral blood leukemia T cell line) | . | . | . | . | . |
Regulator of nonsense transcripts 2 | Q9HAU5 | Homo sapiens | Pro Info | Quantitative fluorescence in situ hybridisation and flow cytometry (flow-FISH) | J-Lat Cells (Human peripheral blood leukemia T cell line) | . | . | . | . | . |
Telomerase-binding protein EST1A | Q86US8 | Homo sapiens | Pro Info | Quantitative fluorescence in situ hybridisation and flow cytometry (flow-FISH) | J-Lat Cells (Human peripheral blood leukemia T cell line) | . | . | . | . | . |
Functional Go Enrichment analysis of those proteins interacting with the 5'UTR - 3'UTR of this Strain
Functional KEGG Enrichment analysis of those proteins interacting with the 5'UTR - 3'UTR of this Strain
Pathways | Category | Adjusted P-value | Odds Ratio | Combined Score |
---|---|---|---|---|
mRNA surveillance pathway | KEGG Pathway | 3.40E-06 | 314.2105263 | 4301.833892 |
RNA transport | KEGG Pathway | 0.001266825 | 71.77898551 | 507.9588318 |
Human immunodeficiency virus 1 infection | KEGG Pathway | 0.051893087 | 23.44075829 | 69.35111721 |
Virus RNA Sequence Information
>U43141.1 Human immunodeficiency virus type 1 complete genome
AAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAGCTAGAGATCCCTC
AGATCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGTAGA
ACCAGAGGAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGA
CTGGTGAGTACGCCAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTAT
TAAGCGGGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAATT
AAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCA
GAAGGCTGTAGACAGATAATGGGACAGCTACAACCGTCCCTTCAGACAGGATCAGAAGAACTTAGATCAT
TATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTT
AGACAAGGTAGAGGAAGAGCAAAACAACAGTAAGAAAAAGGCACAGCAAGAAGCAGCTGACGCAGGAAAC
AGAAACCAGGTCAGCCAAAATTACCCTATAGTGCAAAACCTACAGGGACAAATGGTACATCAGGCCATAT
CACCTAGAACTTTAAATGCATGGGTAAAAGTAGTGGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCAT
GTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACAT
CAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAG
TGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAG
TACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATATATAAGAGA
TGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGATATAAAACAAG
GACCAAAAGAACCCTTTAGAGATTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAGCAAGCTACACA
GGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAATCCAGATTGTAAGACTATTTTA
AAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCC
ATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAGGTTCAGCTGCCATAATGATGCAGAGAGG
CAATTTTAGGAACCAAAGAAAGACTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAAT
TGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAGGATTGCACAG
AAAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTTCTTCAGAG
CAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAGCTCCCTCTCAGAAG
CAGGAGCCGATAGACAAGGAACTGTATCCCTTAGCCTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGT
CACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTAGTAGAA
GAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGAGGAATTGGAGGTTTTATCAAAGTAAGAC
AGTATGATCAGATACTCGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACC
TGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATT
GAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAG
AAAAAATAAAAGCATTAATAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCC
TGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAGGACAGTACTAAATGGAGAAAATTAGTA
GATTTCAGAGAACTTAATAAAAGAACTCAAGATTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAG
GGTTAAAAAAGAAAAAATCAGTAACAGTCCTGGATGTGGGTGATGCATATTTTTCAGTTCCCCTAGATAA
AGACTTCAGAAAATATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAG
TACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAG
AGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGA
CTTAGAAATAGAGCAGCATAGAACAAAAATAGAGGAACTGAGACAGCATCTGTTGAAGTGGGGATTTACC
ACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAAT
GGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGG
AAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTATGTAAGCTACTTAGGGGA
CCCAAAGCACTAACAGAAGTAATACCACTAACAAAAGAAGCAGAGCTAGAACTAGCAGAAAACAGGGAGA
TTCTAAAAGAACCAGTACATGGAGTGTATTGTGACCCATCAAAAGACTTAGTAGCAGAAATACAGAAGCA
GGGGGAAGGCCAATGGACATATCAAATTTATCAAGAACCATTTAAGAATCTGAAAACAGGAAAGTATGCA
AGAATGAGGGGTGCCCACACTAATGATATAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCACAGAAG
GCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAGCATGGTG
GACGGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTA
TGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGGG
AGACTAAATTAGGAAAAGCAGGATATGTTACTGACAGGGGAAGACAAAAAGTTGTCTCCCTAAATGACAC
AACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGACTAGAAGTAAACATA
GTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCA
GTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAAT
TGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGAAAAGTACTATTTTTAGATGGAATA
GATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAATGATTTTAACCTGC
CACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGG
ACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTA
GCAGTTCATGTAGCTAGTGGATATATAGAAGCAGAAGTCATTCCAGTAGAGACAGGGCAGGAAACAGCAT
ATTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAGTACATACAGACAATGGCCCTAATTTCAC
CAGTACTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCC
CAAAGTCAAGGGGTAGTAGAATCTATGAATAAAGAGTTAAAGAAAATTATAGGACAGGTAAGAGATCAGG
CTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGG
GGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAA
CAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGAACCATTTTGGAAAGGACCAG
CAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAG
AAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGGCAGTGATGATTGTGTGGCAAGTAGACAG
GATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATATATTGTTCACGGAAAGCTAAGAACTGG
GTTTATAGACATCACTATGAAAGCACTAATCCAAGAGTAAGTTCAGAAGTACACATCCCACTAGGGGAAG
CTAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGC
CTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTAACCTAGCAGACCAACTAATTCAC
CTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACGTATAGTTAGTCCTA
GGTGTGAATATCAAGCAGGACATAGCAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAACAAC
ACCAAAAAAGATAAAGCCACCTTTGCCTATTGTTACAAAACTGACAGAAGATAGATGGAACAAGCCCCAG
AAGACCAAGGGCCACAGAGGGAGCCATACAATGCATGGACACTAGAGCTTTTAGAGGAGCTTAAGAGTGA
AGCTGTTAGACATTTTCCCAGGATATGGCTACATAGCTTAGGACAATATATCTATGAAACTTATGGGGAT
ACTTGGGCAGGAGTAGAAGCCATAATAAGAATACTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGT
GTCGCCATAGCAGAATAGGCATTACTCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAG
AGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACCCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCCT
TCATTGCCAAGTTTGTTTCACAAGAAAAGGCTTAAGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGA
CGAAGAGCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTACCAAAGCAGTAAGTAGTACATGTGATGT
TATCTTTACAAATAGCAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGTAATAGTTGTGTGGACCAT
AGTAGTCATAGAATATAGGAAATTATTAAGACAAAGAAAAATAAACAGGTTAATTGATAGACTAACAGAA
AGAGCAGAAGACAGTGGCAATGAAAGTGAAGGAGACCAGGAAGAATTATCAGCGCTTGTGGAGAGGGGGC
ACCTTGCTCCTTGGGATGTTAATGATCAGTAGTGTTGCAGGAAACTTGTGGGTCACAGTCTATTATGGGG
TACCTGTGTGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCTTATGATACAGAGGT
ACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTAATGGGAAAT
GTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCAGGAAGATATAATCAGTTTAT
GGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAAATGCACTGATTATAA
TAATGCCACTAACAGTAGTTGGGGAAGGATGGAGAAAGGAGAAATACAAAACTGCTCTTTCAAGGTCACC
ACAAACATAAGAGATAAGGTACAGAAAGAATCTGCACTTTTTTATAAAACTGATGTAGTACCAATAGATA
ATAATAAGACTAGTAATAGGGATAATACTACCAGCTATATGTTGATACATTGTAATAGATCTGTCATTAC
ACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATT
TTAAAGTGTAATGATAAAAAGTTCAATGGAAAAGGACCATGTAAAAATGTCAGCACAGTACAGTGTACAC
ATGGAATTAGGCCAGTAGTGTCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAAAAGAAGTAGTAAT
TAGATCTGACAATTTCACAGATAATACTAAAACCATAATAGTACATCTGAACGAATCTGTAGAAATTAAT
TGTACAAGACCCAACAACAATACAAGAAAAGGTATACATATAGGACCAGGGAGAGCAGTTTATACGACAG
GAAGAATAGTAGGAGATATAAGACTAGCACATTGTAACATTAGTAGAGCAAGATGGAATAAAACTCTAAA
CCAAATATTTAGAAAATTAAGAGAAATTAGACAATTTGAAAATAAAACAATAGTCTTTAATCGATCCTCA
GGAGGAGACCCAGAAATTGTAATGCACAGCTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACAA
AACTGTTTAATAGTACTTGGAATAATACTAGTACTTGGAATGATAATGGAAATGACACTATCATACTGCC
ATGTAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTGGA
GGACTAATTAGATGTTCATCAAATATTACAGGGCTGATATTAACAAGAGATGGTGGTAATGATAACAGTA
GTACCACCGAGATCTTCAGACCTGGAGGGGGAAATATGAGGGACAATTGGAGAAATGAATTATATAAATA
TAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAA
AAAAGAGCGGTGGGAATGCTAGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCG
CACGGTCACTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAAAACAATTT
GCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCA
AGAGTCCTGGCTGTGGAAAGATACCTAAGGGATCAACAGCTCCTAGGGATTTGGGGTTGCTCTGGAAAAC
TCATCTGCACCACTACTGTGCCTTGGAATGCTAGTTGGAGTAATAAAACCCTGGATCAGATTTGGAATAA
CATGACCTGGATGGAGTGGGAAAGAGAAATTGACAATTACACAAGCTTAATATATACCTTAATTGAACAA
TCGCAAAACCAACAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAGTGGGCAAGTTTGTGGAGTT
GGTATGACATATCAAATTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTT
AAGAATAGTTTTTGCTGTGCTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTCGTTTCAG
ACCCTCCTCCCAGCAACGAGGGGACCCCGACAGCCCGAAGAAATCGAAGAAGAAGGTGGAGAGAGAGACA
GAGGCAGATCCGTTCGATTAGTGAGCGGATTCTTAGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCT
CTTCAGCTACCGCCGCTTGAGAGACTTACTCTTGATTGTAGCGAAGATTGTGGAAACTCTGGGACGCAGG
GGGTGGGAAGTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAGTGCTG
TCAGCTTGTTCAATACTATAGCTATAGCAGTAGCTGAGGGAACAGATAGGGTTATAGAAGTAGTACAAAG
AGCTTGTAGAGCAATTCTCCACATACCTAGAAGAGTGAGACAGGGCTTGGAAAGGGCCTTGCTATAAAAT
GGGTGGCAAGTGGTCAAAATGTAGTGGATGGCCTACTGTAAGGGAAAGAATGAAACAAGCTGAGCCTGAG
CCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGAAAAAACATGGAGCAATCACAAGTAGCAATA
CAGCAACTAATAACGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAAGAGGAAGAGGGTTTTCCAGTCAG
ACCACAGGTACCTTTAAGACCAATGACTTACAAGGGAGCTTTAGATCTTAGCCACTTTTTAAAAGAAAAG
GGGGGACTGGAAGGGTTAATTTACTCCCCAAAAAGACAAGAGATCCTTGATCTGTGGGTCTACCACACAC
AAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATG
GTGCTTCAAGTTAGTACCAGTTGAACCAGATGAAGAAGAGAACAGCAGCCTGTTACACCCTGCGAGCCTG
CATGGGACAGAGGACACGGAGAGAGAAGTGTTAAAGTGGAAGTTTGACAGCCATCTAGCATTTCATCACA
AGGCCCGAGAGCTGCATCCGGAGTACTACAAAGACTGCTGACACCGAGTTTTCTACAAGGGACTTTCCGC
TGGGGACTTTCCAGGGAGGCGTGACCTGGGCGGGACTGGGGAGTGGCTGGGGAGTGGCGAGCCCTCAGAT
GCTGCATATAAGCAGCCGCTTTTTGCCTGTACTGGCTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGC
TCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTT
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