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DownloadDetails of Virus RNA
| Strain Information | Strain Name |
Influenza A virus (strain A/WSN/1933(H1N1))
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| Strain Family |
Orthomyxoviridae
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| RNA Binding Site |
PB1
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| Virus Information | Virus Name |
Influenza A virus (IAV)
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| Taxonomy ID | 382835 | ||||||||
Full list of Host ncRNAs interacting with the Virus RNA
| HncRNA | Host Species | HncRNA Detail | PMID | Source | Target Gene | Target Gene ID | Target Gene Source | PMID | Source |
|---|---|---|---|---|---|---|---|---|---|
| hsa-miR-323a-3p | Homo sapiens | HncRNA Info | 20554777 | ViRBase | SMAD3 | . | miRTarBase | 26908446 | miRTarBase |
| hsa-miR-491-5p | Homo sapiens | HncRNA Info | 20554777 | ViRBase | WNT3A | . | miRTarBase | 28358374 | miRTarBase |
| hsa-miR-654-5p | Homo sapiens | HncRNA Info | 20554777 | ViRBase | EPSTI1 | . | miRTarBase | 27186421 | miRTarBase |
Host ncRNA GO Enrichment
| GO Term | GO Category | GO ID | Adjusted P-value | Odds Ratio | Combined Score |
|---|---|---|---|---|---|
| DEAD/H-box RNA Helicase Binding | GO Molecular Function |
GO:0017151
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0.015743372 | 1999.2 | 14021.16789 |
| Nuclear Glucocorticoid Receptor Binding | GO Molecular Function |
GO:0035259
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0.015743372 | 1427.857143 | 9603.489235 |
| co-SMAD Binding | GO Molecular Function |
GO:0070410
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0.015743372 | 1249.3125 | 8255.546445 |
| I-SMAD Binding | GO Molecular Function |
GO:0070411
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0.016482422 | 832.7083333 | 5196.553512 |
| Transforming Growth Factor Beta Receptor Binding | GO Molecular Function |
GO:0005160
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0.016482422 | 587.6470588 | 3476.150033 |
| R-SMAD Binding | GO Molecular Function |
GO:0070412
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0.016482422 | 554.9722222 | 3252.888057 |
| bHLH Transcription Factor Binding | GO Molecular Function |
GO:0043425
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0.016482422 | 475.6190476 | 2718.11468 |
| Frizzled Binding | GO Molecular Function |
GO:0005109
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0.019800359 | 311.953125 | 1656.465408 |
| Transcription Coactivator Binding | GO Molecular Function |
GO:0001223
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0.019800359 | 302.4848485 | 1597.174051 |
| Ubiquitin Binding | GO Molecular Function |
GO:0043130
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0.041833909 | 126.0632911 | 558.0583645 |
| Transcription Coregulator Binding | GO Molecular Function |
GO:0001221
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0.042879291 | 101.5255102 | 427.8963601 |
| Cytokine Receptor Binding | GO Molecular Function |
GO:0005126
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0.042879291 | 100.4949495 | 422.5479098 |
| Phosphatase Binding | GO Molecular Function |
GO:0019902
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0.042879291 | 89.57657658 | 366.5419846 |
| Nuclear Receptor Binding | GO Molecular Function |
GO:0016922
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0.042879291 | 87.20614035 | 354.550257 |
| G Protein-Coupled Receptor Binding | GO Molecular Function |
GO:0001664
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0.048659857 | 71.43165468 | 276.4546995 |
| Cytokine Activity | GO Molecular Function |
GO:0005125
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0.057890465 | 55.98870056 | 203.3488284 |
| Transcription Regulatory Region Nucleic Acid Binding | GO Molecular Function |
GO:0001067
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0.06574765 | 44.33632287 | 150.9388664 |
| RNA Polymerase II-specific DNA-binding Transcription Factor Binding | GO Molecular Function |
GO:0061629
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0.06574765 | 43.54625551 | 147.4871458 |
| Ubiquitin Protein Ligase Binding | GO Molecular Function |
GO:0031625
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0.071214162 | 36.53148148 | 117.495948 |
| DNA-binding Transcription Factor Binding | GO Molecular Function |
GO:0140297
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0.071214162 | 35.08185053 | 111.4570457 |
| Nuclear Inner Membrane | GO Cellular Component |
GO:0005637
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0.069199983 | 332.7833333 | 1787.845974 |
| Glutamatergic Synapse | GO Cellular Component |
GO:0098978
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0.069199983 | 129.3506494 | 575.8728137 |
| Golgi Lumen | GO Cellular Component |
GO:0005796
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0.069199983 | 100.4949495 | 422.5479098 |
| Early Endosome Membrane | GO Cellular Component |
GO:0031901
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0.069199983 | 86.44347826 | 350.7054294 |
| Endocytic Vesicle Membrane | GO Cellular Component |
GO:0030666
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0.075718094 | 62.78164557 | 235.0475078 |
| Endocytic Vesicle | GO Cellular Component |
GO:0030139
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0.076951917 | 50.77435897 | 179.5652139 |
| Nuclear Membrane | GO Cellular Component |
GO:0031965
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0.076951917 | 43.74115044 | 148.3373111 |
| Endoplasmic Reticulum Lumen | GO Cellular Component |
GO:0005788
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0.078029959 | 34.83038869 | 110.4154838 |
| Early Endosome | GO Cellular Component |
GO:0005769
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0.078029959 | 32.1748366 | 99.5287542 |
| Endosome Membrane | GO Cellular Component |
GO:0010008
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0.078029959 | 27.27361111 | 80.02232991 |
| Cytoplasmic Vesicle Membrane | GO Cellular Component |
GO:0030659
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0.078029959 | 25.2693299 | 72.2895958 |
| Organelle Inner Membrane | GO Cellular Component |
GO:0019866
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0.078029959 | 24.68513854 | 70.06492755 |
| Bounding Membrane Of Organelle | GO Cellular Component |
GO:0098588
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0.140558213 | 11.72310513 | 25.06371049 |
| Intracellular Organelle Lumen | GO Cellular Component |
GO:0070013
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0.140558213 | 11.19415205 | 23.45919201 |
| Nucleus | GO Cellular Component |
GO:0005634
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0.568920692 | 1.728823005 | 1.086656466 |
| Intracellular Membrane-Bounded Organelle | GO Cellular Component |
GO:0043231
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0.592739815 | 1.432450715 | 0.749171346 |
| Positive Regulation Of Cardiac Muscle Cell Differentiation | GO Biological Process |
GO:2000727
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0.012303596 | 2499.125 | 17982.859 |
| Protein-Containing Complex Assembly | GO Biological Process |
GO:0065003
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0.012303596 | 120.6809816 | 861.2145861 |
| Regulation Of Extracellular Matrix Assembly | GO Biological Process |
GO:1901201
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0.012303596 | 1999.2 | 14021.16789 |
| Regulation Of Transforming Growth Factor Beta2 Production | GO Biological Process |
GO:0032909
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0.012303596 | 1999.2 | 14021.16789 |
| SMAD Protein Complex Assembly | GO Biological Process |
GO:0007183
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0.012303596 | 1999.2 | 14021.16789 |
| Positive Regulation Of Macromolecule Metabolic Process | GO Biological Process |
GO:0010604
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0.012303596 | 108.480663 | 751.6539014 |
| Regulation Of miRNA Metabolic Process | GO Biological Process |
GO:2000628
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0.012303596 | 1427.857143 | 9603.489235 |
| Positive Regulation Of Extracellular Matrix Assembly | GO Biological Process |
GO:1901203
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0.012303596 | 1427.857143 | 9603.489235 |
| Positive Regulation Of Cardiocyte Differentiation | GO Biological Process |
GO:1905209
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0.012303596 | 1249.3125 | 8255.546445 |
| Regulation Of Cardiac Muscle Cell Differentiation | GO Biological Process |
GO:2000725
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0.012303596 | 1249.3125 | 8255.546445 |
| Wnt Signaling Pathway Involved In Midbrain Dopaminergic Neuron Differentiation | GO Biological Process |
GO:1904953
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0.012303596 | 1249.3125 | 8255.546445 |
| Cell Proliferation In Forebrain | GO Biological Process |
GO:0021846
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0.012303596 | 1110.444444 | 7220.954199 |
| Midbrain Dopaminergic Neuron Differentiation | GO Biological Process |
GO:1904948
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0.012303596 | 1110.444444 | 7220.954199 |
| Presynapse Organization | GO Biological Process |
GO:0099172
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0.012303596 | 999.35 | 6403.334808 |
| Positive Regulation Of Gene Expression | GO Biological Process |
GO:0010628
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0.012303596 | 81.66945607 | 520.9620402 |
| Primary miRNA Processing | GO Biological Process |
GO:0031053
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0.012303596 | 908.4545455 | 5741.921288 |
| Secondary Palate Development | GO Biological Process |
GO:0062009
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0.012303596 | 832.7083333 | 5196.553512 |
| Presynapse Assembly | GO Biological Process |
GO:0099054
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0.012303596 | 713.6785714 | 4351.685757 |
| Positive Regulation Of Nucleic Acid-Templated Transcription | GO Biological Process |
GO:1903508
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0.012303596 | 70.06126126 | 426.2297675 |
| Regulation Of Presynapse Assembly | GO Biological Process |
GO:1905606
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0.012303596 | 666.0666667 | 4018.416231 |
Host ncRNA KEGG Pathway Enrichment
| Pathways | Category | Adjusted P-value | Odds Ratio | Combined Score |
|---|---|---|---|---|
| Signaling pathways regulating pluripotency of stem cells | KEGG Pathway | 0.001339256 | 281.6453901 | 2476.899329 |
| Gastric cancer | KEGG Pathway | 0.001339256 | 270.0680272 | 2352.860511 |
| Hippo signaling pathway | KEGG Pathway | 0.001339256 | 246.4099379 | 2102.463928 |
| Wnt signaling pathway | KEGG Pathway | 0.001339256 | 241.8658537 | 2054.867231 |
| Hepatocellular carcinoma | KEGG Pathway | 0.001339256 | 238.9277108 | 2024.180921 |
| Pathways in cancer | KEGG Pathway | 0.011059025 | 73.60302457 | 454.7551711 |
| Basal cell carcinoma | KEGG Pathway | 0.031929892 | 160.766129 | 749.9503377 |
| Inflammatory bowel disease | KEGG Pathway | 0.031929892 | 155.7265625 | 721.5902191 |
| Adherens junction | KEGG Pathway | 0.031929892 | 142.3357143 | 647.0165481 |
| Pancreatic cancer | KEGG Pathway | 0.031929892 | 132.8133333 | 594.7253886 |
| Chronic myeloid leukemia | KEGG Pathway | 0.031929892 | 132.8133333 | 594.7253886 |
| Colorectal cancer | KEGG Pathway | 0.031929892 | 117.1294118 | 510.0740472 |
| TGF-beta signaling pathway | KEGG Pathway | 0.031929892 | 107.0107527 | 456.5339024 |
| AGE-RAGE signaling pathway in diabetic complications | KEGG Pathway | 0.031929892 | 100.4949495 | 422.5479098 |
| Melanogenesis | KEGG Pathway | 0.031929892 | 99.485 | 417.3164777 |
| Th17 cell differentiation | KEGG Pathway | 0.031929892 | 93.8254717 | 388.1897375 |
| Cell cycle | KEGG Pathway | 0.032139642 | 80.78861789 | 322.4078415 |
| FoxO signaling pathway | KEGG Pathway | 0.032139642 | 76.41153846 | 300.7705652 |
| Apelin signaling pathway | KEGG Pathway | 0.032139642 | 73.01838235 | 284.1663654 |
| Breast cancer | KEGG Pathway | 0.032139642 | 67.98287671 | 259.8141882 |
Virus RNA Sequence Information
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>NC_002023.1 Influenza A virus (A/Puerto Rico/8/1934(H1N1)) segment 1, complete sequence
AGCGAAAGCAGGTCAATTATATTCAATATGGAAAGAATAAAAGAACTAAGAAATCTAATGTCGCAGTCTC
GCACCCGCGAGATACTCACAAAAACCACCGTGGACCATATGGCCATAATCAAGAAGTACACATCAGGAAG
ACAGGAGAAGAACCCAGCACTTAGGATGAAATGGATGATGGCAATGAAATATCCAATTACAGCAGACAAG
AGGATAACGGAAATGATTCCTGAGAGAAATGAGCAAGGACAAACTTTATGGAGTAAAATGAATGATGCCG
GATCAGACCGAGTGATGGTATCACCTCTGGCTGTGACATGGTGGAATAGGAATGGACCAATGACAAATAC
AGTTCATTATCCAAAAATCTACAAAACTTATTTTGAAAGAGTCGAAAGGCTAAAGCATGGAACCTTTGGC
CCTGTCCATTTTAGAAACCAAGTCAAAATACGTCGGAGAGTTGACATAAATCCTGGTCATGCAGATCTCA
GTGCCAAGGAGGCACAGGATGTAATCATGGAAGTTGTTTTCCCTAACGAAGTGGGAGCCAGGATACTAAC
ATCGGAATCGCAACTAACGATAACCAAAGAGAAGAAAGAAGAACTCCAGGATTGCAAAATTTCTCCTTTG
ATGGTTGCATACATGTTGGAGAGAGAACTGGTCCGCAAAACGAGATTCCTCCCAGTGGCTGGTGGAACAA
GCAGTGTGTACATTGAAGTGTTGCATTTGACTCAAGGAACATGCTGGGAACAGATGTATACTCCAGGAGG
GGAAGTGAAGAATGATGATGTTGATCAAAGCTTGATTATTGCTGCTAGGAACATAGTGAGAAGAGCTGCA
GTATCAGCAGACCCACTAGCATCTTTATTGGAGATGTGCCACAGCACACAGATTGGTGGAATTAGGATGG
TAGACATCCTTAAGCAGAACCCAACAGAAGAGCAAGCCGTGGGTATATGCAAGGCTGCAATGGGACTGAG
AATTAGCTCATCCTTCAGTTTTGGTGGATTCACATTTAAGAGAACAAGCGGATCATCAGTCAAGAGAGAG
GAAGAGGTGCTTACGGGCAATCTTCAAACATTGAAGATAAGAGTGCATGAGGGATATGAAGAGTTCACAA
TGGTTGGGAGAAGAGCAACAGCCATACTCAGAAAAGCAACCAGGAGATTGATTCAGCTGATAGTGAGTGG
GAGAGACGAACAGTCGATTGCCGAAGCAATAATTGTGGCCATGGTATTTTCACAAGAGGATTGTATGATA
AAAGCAGTTAGAGGTGATCTGAATTTCGTCAATAGGGCGAATCAGCGACTGAATCCTATGCATCAACTTT
TAAGACATTTTCAGAAGGATGCGAAAGTGCTTTTTCAAAATTGGGGAGTTGAACCTATCGACAATGTGAT
GGGAATGATTGGGATATTGCCCGACATGACTCCAAGCATCGAGATGTCAATGAGAGGAGTGAGAATCAGC
AAAATGGGTGTAGATGAGTACTCCAGCACGGAGAGGGTAGTGGTGAGCATTGACCGGTTCTTGAGAGTCC
GGGACCAACGAGGAAATGTACTACTGTCTCCCGAGGAGGTCAGTGAAACACAGGGAACAGAGAAACTGAC
AATAACTTACTCATCGTCAATGATGTGGGAGATTAATGGTCCTGAATCAGTGTTGGTCAATACCTATCAA
TGGATCATCAGAAACTGGGAAACTGTTAAAATTCAGTGGTCCCAGAACCCTACAATGCTATACAATAAAA
TGGAATTTGAACCATTTCAGTCTTTAGTACCTAAGGCCATTAGAGGCCAATACAGTGGGTTTGTGAGAAC
TCTGTTCCAACAAATGAGGGATGTGCTTGGGACATTTGATACCGCACAGATAATAAAACTTCTTCCCTTC
GCAGCCGCTCCACCAAAGCAAAGTAGAATGCAGTTCTCCTCATTTACTGTGAATGTGAGGGGATCAGGAA
TGAGAATACTTGTAAGGGGCAATTCTCCTGTATTCAACTACAACAAGGCCACGAAGAGACTCACAGTTCT
CGGAAAGGATGCTGGCACTTTAACCGAAGACCCAGATGAAGGCACAGCTGGAGTGGAGTCCGCTGTTCTG
AGGGGATTCCTCATTCTGGGCAAAGAAGACAGGAGATATGGGCCAGCATTAAGCATCAATGAACTGAGCA
ACCTTGCGAAAGGAGAGAAGGCTAATGTGCTAATTGGGCAAGGAGACGTGGTGTTGGTAATGAAACGAAA
ACGGGACTCTAGCATACTTACTGACAGCCAGACAGCGACCAAAAGAATTCGGATGGCCATCAATTAGTGT
CGAATAGTTTAAAAACGACCTTGTTTCTACT
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