Virus General Information

  Virus Name
Human T-cell leukemia virus type 1 (HTLV-1)
  Lineage
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Deltaretrovirus; Primate T-lymphotropic virus 1
  Virus Molecule Type
ssRNA-RT
  Sequence ID
NC_001436.1
  Genome Type
Non-segmented
  Related Host Homo sapiens
  Related Disease Adult T-cell leukemia
  External Link
 Taxon ID 11908
 Virus-Host DB https://www.genome.jp/virushostdb/11908
 KEGG GENOME ID T40003
 KEGG BRITE ID NC_001436

Virus Virion and Genome Information

    Virion Information
Enveloped, spherical to pleomorphic in shape, 80-100 nm in diameter.
    GENOME Information
Monopartite, linear, dimeric, ssRNA(+) genome of about 7-11 kb,, with a 5'-cap and a 3'poly-A tail. There are two long terminal repeats (LTRs) at the 5' and 3' ends. The LTRs contain the U3, R, and U5 regions. There are also a primer binding site (PBS) at the 5'end and a polypurine tract (PPT) at the 3'end.

Virus-RNA -- Host-Protein Interaction

RNA Binding Site RNA Detail Protein Name Host Species Uniprot ID Protein Detail
5'UTR - 3'UTR RNA Info ATP-dependent RNA helicase DDX3X Homo sapiens O00571 Pro Info

Virus-RNA -- Host-ncRNA Interaction

RNA Binding Site RNA Detail HncRNA Name Host Species External Link HncRNA Detail
5'UTR - 3'UTR RNA Info hsa-miR-146a-5p Homo sapiens miRBase HncRNA Info

Virus Sequence Information

>NC_001436.1 Human T-lymphotropic virus 1, complete genome GGCTCGCATCTCTCCTTCACGCGCCCGCCGCCTTACCTGAGGCCGCCATCCACGCCGGTTGAGTCGCGTT CTGCCGCCTCCCGCCTGTGGTGCCTCCTGAACTACGTCCGCCGTCTAGGTAAGTTTAGAGCTCAGGTCGA GACCGGGCCTTTGTCCGGCGCTCCCTTGGAGCCTACCTAGACTCAGCCGGCTCTCCACGCTTTGCCTGAC CCTGCTTGCTCAACTCTACGTCTTTGTTTCGTTTTCTGTTCTGCGCCGTTACAGATCGAAAGTTCCACCC CTTTCCCTTTCATTCACGACTGACTGCCGGCTTGGCCCACGGCCAAGTACCGGCAACTCTGCTGGCTCGG AGCCAGCGACAGCCCATTCTATAGCACTCTCCAGGAGAGAAATTTAGTACACAGTTGGGGGCTCGTCCGG GATTCGAGCGCCCCTTTATTCCCTAGGCAATGGGCCAAATCTTTTCCCGTAGCGCTAGCCCTATTCCGCG GCCGCCCCGGGGGCTGGCCGCTCATCACTGGCTTAACTTCCTCCAGGCGGCATATCGCCTAGAACCCGGT CCCTCCAGTTACGATTTCCACCAGTTAAAAAAATTTCTTAAAATAGCTTTAGAAACACCGGTCTGGATCT GCCCCATTAACTACTCCCTCCTAGCCAGCCTACTCCCAAAAGGATACCCCGGCCGGGTGAATGAAATTTT ACACATACTCATCCAAACCCAAGCCCAGATCCCGTCCCGCCCCGCGCCGCCGCCGCCGTCATCCTCCACC CACGACCCCCCGGATTCTGACCCACAAATCCCCCCTCCCTATGTTGAGCCTACAGCCCCCCAAGTCCTTC CAGTCATGCACCCACATGGTGCCCCTCCCAACCACCGCCCATGGCAAATGAAAGACCTACAGGCCATTAA GCAAGAAGTCTCCCAAGCGGCCCCTGGAAGCCCCCAGTTTATGCAGACCATCCGGCTTGCGGTGCAGCAG TTTGACCCCACTGCCAAAGACCTCCAAGACCTCCTGCAGTACCTTTGCTCCTCCCTCGTGGCTTCCCTCC ATCACCAGCAGCTAGATAGCCTTATATCAGAGGCCGAAACTCGAGGTATTACAGGTTATAACCCCTTAGC CGGTCCCCTCCGTGTCCAAGCCAACAATCCACAACAACAAGGATTAAGGCGAGAATACCAGCAACTCTGG CTCGCCGCCTTCGCCGCCCTGCCAGGGAGTGCCAAAGACCCTTCCTGGGCCTCTATCCTCCAAGGCCTGG AGGAGCCTTACCACGCCTTCGTAGAACGCCTCAACATAGCTCTTGACAATGGGCTGCCAGAAGGCACGCC CAAAGACCCCATTTTACGTTCCTTAGCCTACTCTAATGCAAACAAAGAATGCCAAAAATTACTACAGGCC CGAGGGCACACTAATAGCCCTCTAGGAGATATGTTGCGGGCTTGTCAGGCCTGGACCCCCAAAGACAAAA CCAAAGTGTTAGTTGTCCAGCCTAAAAAACCCCCCCCAAATCAGCCGTGCTTCCGGTGCGGGAAAGCAGG CCACTGGAGTCGGGACTGCACTCAGCCTCGTCCTCCCCCTGGGCCATGCCCCCTATGTCAAGATCCAACT CACTGGAAGCGAGACTGCCCCCGCCTAAAGCCCACTATCCCAGAACCAGAGCCAGAGGAGGATGCCCTCC TATTAGATCTCCCCGCCGACATCCCACACCCAAAAAACTCCATAGGGGGGGAGGTTTAACCTCCCCCCCC ACATTACAGCAAGTCCTTCCTAACCAAGACCCAACATCTATTCTGCCAGTTATACCGTTAGATCCCGCCC GTCGGCCCGTAATTAAAGCCCAGATTGACACCCAGACCAGCCACCCAAAGACTATCGAAGCTCTACTAGA TACAGGAGCAGACATGACAGTCCTTCCGATAGCCTTGTTCTCAAGTAATACTCCCCTCAAAAACACATCC GTGTTAGGGGCAGGGGGCCAAACCCAAGATCACTTTAAGCTCACCTCCCTTCCTGTGCTAATACGCCTCC CTTTCCGGACGACGCCTATTGTTTTAACATCTTGCCTAGTTGATACCAAAAACAACTGGGCCATCATAGG TCGTGATGCCTTACAACAATGCCAAGGCGTCCTGTACCTCCCTGAGGCAAAAAGGCCGCCTGTAATCTTG CCAATACAGGCGCCAGCTGTCCTTGGGCTAGAACACCTCCCAAGGCCCCCCGAAATCAGCCAGTTCCCTT TAAACCAGAACGCCTCCAGGCCTTGCAACACTTGGTCCGGAAGGCCCTGGAGGCAGGCCATATCGAACCC TACACCGGGCCAGGAAATAACCCAGTATTCCCAGTTAAAAAAGCCAATGGAACCTGGCGATTCATCCACG ACCTGCGGGCCACTAACTCTCTAACCATAGATCTCTCATCATCTTCCCCCGGGCCCCCTGACTTGTCCAG CCTGCCAACTACACTAGCCCACTTACAAACTATAGACCTTAAAGACGCCTTTTTCCAAATCCCCCTACCT AAACAGTTCCAGCCCTACTTTGCTTTCACTGTCCCACAGCAGTGTAACTACGGCCCCGGCACTAGATACG CCTGGAGAGTACTACCCCAAGGGTTTAAAAATAGTCCCACCCTGTTCGAAATGCAGCTGGCCCATATCCT GCAGCCCATTCGGCAAGCCTTCCCCCAATGCACTATTCTTCAGTACATGGATGACATTCTCCTGGCAAGC CCCTCCCATGCGGACCTGCAACTACTCTCAGAGGCCACAATGGCTTCCCTAATCTCCCATGGGTTGCCTG TGTCCGAAAACAAAACCCAGCAAACCCCTGGAACAATTAAGTTCCTAGGGCAAATAATTTCACCTAATCA CCTCACTTATGATGCAGTCCCCAAGGTACCTATACGGTCCCGCTGGGCGCTACCTGAACTTCAAGCCCTA CTTGGCGAGATTCAGTGGGTCTCCAAAGGAACTCCTACCTTACGCCAGCCCCTTCACAGTCTCTACTGTG CCTTACAAAGGCATACTGATCCCCGAGACCAAATATATTTAAATCCTTCTCAAGTTCAATCATTAGTGCA GCTGCGGCAGGCCCTGTCACAGAACTGCCGCAGTAGACTAGTCCAAACCCTGCCCCTCCTAGGGGCTATT ATGCTGACCCTCACTGGCACCACCACTGTGGTGTTCCAGTCCAAGCAGCAGTGGCCACTTGTCTGGCTAC ATGCCCCCCTACCCCACACTAGCCAGTGCCCCTGGGGGCAGCTACTTGCCTCAGCTGTGTTATTACTCGA CAAATACACCTTGCAATCCTATGGACTACTCTGCCAAACCATACATCATAACATCTCCACCCAAACCTTC AACCAATTCATTCAAACATCTGACCACCCCAGTGTTCCTATCTTACTCCACCACAGTCACCGATTCAAAA ATTTAGGTGCCCAGACTGGAGAACTTTGGAACACTTTTCTTAAAACAACTGCCCCATTGGCTCCTGTGAA AGCCCTTATGCCAGTGTTTACTCTTTCCCCTGTGATCATAAACACCGCCCCTTGCCTGTTTTCAGACGGA TCCACCTCCCAGGCAGCCTATATTCTCTGGGACAAGCATATATTGTCACAAAGATCATTCCCCCTTCCGC CACCGCACAAGTCGGCCCAACGGGCCGAACTTCTCGGACTTTTGCATGGCCTCTCCAGCGCCCGTTCGTG GCGCTGTCTCAACATATTTCTAGACTCCAAGTATCTTTATCATTACCTTCGGACCCTTGCCCTAGGCACC TTCCAAGGCAGGTCCTCTCAGGCCCCCTTTCAGGCCCTCCTGCCCCGCTTACTATCGCGTAAGGTCGTCT ATTTGCACCACGTTCGCAGCCATACCAATCTACCTGATCCCATCTCCAGGCTCAACGCTCTCACAGATGC CCTACTAATCACCCCTGTCCTGCAGCTCTCTCCTGCAGACCTACACAGTTTCACCCATTGCGGACAGACG GCCCTCACACTGCAAGGGGCAACCACAACTGAGGCCTCCAATATCCTGCGCTCTTGCCACGCCTGCCGCA AAAATAACCCACAACATCAGATGCCTCAAGGACACATCCGCCGTGGCCTACTCCCTAACCACATCTGGCA AGGCGACATTACCCATTTCAAATATAAAAATACACTGTATCGCCTTCATGTATGGGTAGACACCTTTTCA GGAGCCATCTCAGCTACCCAAAAGAGAAAAGAAACAAGCTCAGAAGCTATTTCCTCTTTGCTCCAGGCCA TTGCCTATCTAGGCAAGCCTAGCTACATAAACACAGACAATGGCCCTGCCTATATTTCCCAAGACTTCCT CAATATGTGTACCTCCCTTGCTATTCGCCATACTACCCATGTCCCCTACAATCCAACCAGCTCCGGACTT GTAGAACGCTCTAATGGCATTCTTAAAACCCTATTATATAAGTACTTTACTGACAAACCCGACCTACCTA TGGATAATGCTCTATCCATAGCCCTATGGACAATCAACCACCTAAATGTATTAACCAACTGCCACAAAAC CCGATGGCAGCTTCACCACTCCCCCCGACTCCAGCCGATCCCAGAGACACATTCCCTCAGCAATAAACAA ACCCATTGGTATTATTTCAAGCTTCCTGGTCTTAATAGCCGCCAGTGGAAAGGACCACAGGAGGCTCTTC AAGAAGCTGCCGGCGCTGCTCTCATCCCGGTAAGCGCTAGTTCTGCCCAGTGGATCCCGTGGAGGCTCCT CAAGCGAGCTGCATGCCCAAGACCCGTCGGAGGCCCCGCCGATCCCAAAGAAAAAGACCACCAACACCAT GGGTAAGTTTCTCGCCACTTTGATTTTATTCTTCCAGTTCTGCCCCCTCATCCTCGGTGATTACAGCCCC AGCTGCTGTACTCTCACAGTTGGAGTCTCCTCATACCACTCTAAACCCTGCAATCCTGCCCAGCCAGTTT GTTCATGGACCCTCGACCTGCTGGCCCTTTCAGCAGATCAGGCCCTACAGCCACCCTGCCCTAATCTAGT AAGTTACTCCAGCTACCATGCCACCTATTCCCTATATCTATTCCCTCATTGGATCAAAAAGCCAAACCGA AATGGCGGAGGCTATTATTCAGCCTCTTATTCAGACCCTTGTTCCTTAAAATGCCCATACCTAGGGTGCC AATCATGGACCTGCCCCTATACAGGAGCCGTCTCCAGCCCCTACTGGAAATTTCAGCAAGATGTCAATTT TACTCAAGAAGTTTCACACCTCAATATTAATCTCCATTTTTCAAAATGCGGTTTTTCCTTCTCCCTTCTA GTCGACGCTCCAGGATATGACCCCATCTGGTTCCTTAATACCGAACCCAGCCAACTGCCTCCCACCGCCC CTCCTCTACTCTCCCACTCTAACCTAGACCATATCCTCGAGCCCTCTATACCATGGAAATCAAAACTCCT GACTCTTGTCCAGTTAACCCTACAAAGCACTAATTATACTTGCATTGTCTGTATCGATCGTGCCAGCCTA TCCACTTGGCACGTCCTATACTCTCCCAACGTCTCTGTTCCATCCCCTTCTTCTACCCCCCTCCTTTACC CATCGTTAGCGCTTCCAGCCCCCCACCTGACGTTACCATTTAACTGGACCCACTGCTTTGACCCCCAGAT TCAAGCTATAGTCTCCTCCCCCTGTCATAACTCCCTCATCCTGCCCCCCTTTTCCTTGTCACCTGTTCCC ACGCTAGGATCCCGCTCCCGCCGAGCAGTACCGGTGGCGGTCTGGCTTGTCTCCGCCCTGGCCATGGGAG CCGGAGTGGCTGGCAGGATTACCGGCTCCATGTCCCTCGCCTCAGGAAAGAGCCTCCTACATGAGGTGGA CAAAGATATTTCCCAATTAACTCAAGCAATAGTCAAAAACCACAAAAATCTGCTCAAAATTGCACAGTAT GCTGCCCAGAACAGACGAGGCCTTGATCTCCTGTTCTGGGAGCAAGGAGGATTATGCAAAGCATTACAAG AACAGTGCTGTTTTCTAAATATTACTAATTCCCATGTCTCAATACTACAAGAGAGACCCCCCCTTGAAAA TCGAGTCCTGACTGGCTGGGGCCTTAACTGGGACCTTGGCCTCTCACAGTGGGCTCGAGAAGCCTTACAA ACTGGAATCACCCTTGTCGCGCTACTCCTTCTTGTTATCCTTGCAGGACCATGCATCCTCCGTCAGCTAC GACACCTCCCCTCGCGCGTCAGATACCCCCATTACTCTCTTATAAACCCTGAGTCATCCCTGTAAACCAA GCACACAATTATTGCAACCACATCGCCTCCAGCCTCCCCTGCCAATAATTAACCTCTCCCATCAAATCCT CCTTCTCCTGCAGCAACCTCCTCCGTTCAGCCTCCAAGGACTCCACCTCGCCTTCCAACTGTCTAGTATA GCCATCAACCCCCAACTCCTGCATTTTTTCTTTCCTAGCACTATGCTGTTTCGCCTTCTCAGCCCCTTGT CTCCACTTGCGCTCACGGCGCTCCTGCTCTTCCTGCTTTCTCCGGGCGAAGTCAGCGGCCTTCTCCTCCG CCCGCTTCCTGCGCCGTGCCTTCTCCTCTTCCTTCCTTTTCAAATACTCAGCAATCTGCTTTTCCTCCTC TTTCTCCCGCTCTTTTTTTCGCTTCCTCTTCTCCTCAGCCCGTCGCTGCCGATCACGATGCGTTTCCCCG CGAGGTGGCGCTTTCCCCCCTGGAGGGCCCCGTCGCAGCCGGCCGCGGCTTTCCTCTTCTAGAGATAGCA AACCGTCAAGCACAGTTTCCTCCTCCTCCTTGTCCTTTAACTCTTCCTCCAAGGATAATAGCCCGTCCAC CAATTCCTCCACCAGCAGGTCCTCCGGGCATGGAACAGGCAAACATCGAAACAGCCCTACGGATACAAAG TTAACCATGCTTATTATCAGCCCACTTCCCAGGGTTTGGACAGAGTCTTCTTTTCGGATACCCAGTCTAC GTGTTTGGAGACTGTGTACAAGGCGACTGGTGCCCCATCTCTGGGGGACTATGTTCGGCCCGCCTACATC GTCACGCCCTACTGGCCACCTGTCCAGAGCATCAGATCACCTGGGACCCCATCGATGGACGCGTTATCGG CTCAGCTCTACAGTTCCTTATCCCTCGACTCCCCTCCTTCCCCACCCAGAGAACCTCTAAGACCCTTAAG GTCCTTACCCCGCCAATCACTCATACAACCCCCAACATTCCACCCTCCTTCCTCCAGGCCATGCGCAAAT ACTCCCCCTTCCGAAATGGATACATGGAACCCACCCTTGGGCAGCACCTCCCAACCCTGTCTTTTCCAGA CCCCGGACTCCGGCCCCAAAACCTGTACACCCTCTGGGGAGGCTCCGTTGTCTGCATGTACCTCTACCAG CTTTCCCCCCCCATCACCTGGCCCCTCCTGCCCCATGTGATTTTTTGCCACCCCGGCCAGCTCGGGGCCT TCCTCACCAATGTTCCCTACAAACGAATAGAAAAACTCCTCTATAAAATTTCCCTTACCACAGGGGCCCT AATAATTCTACCCGAGGACTGTTTGCCCACCACCCTTTTCCAGCCTGCTAGGGCACCCGTCACGCTGACA GCCTGGCAAAACGGCCTCCTTCCGTTCCACTCAACCCTCACCACTCCAGGCCTTATTTGGACATTTACCG ATGGCACGCCTATGATTTCCGGGCCCTGCCCTAAAGATGGCCAGCCATCTTTAGTACTACAGTCCTCCTC CTTTATATTTCACAAATTTCAAACCAAGGCCTACCACCCCTCATTTCTACTCTCACACGGCCTCATACAG TACTCTTCCTTTCATAATTTGCATCTCCTATTTGAAGAATACACCAACATCCCCATTTCTCTACTTTTTA ACGAAAAAGAGGCAGATGACAATGACCATGAGCCCCAAATATCCCCCGGGGGCTTAGAGCCTCTCAGTGA AAAACATTTCCGTGAAACAGAAGTCTGAGAAGGTCAGGGCCCAGAATAAGGCTCTGACGTCTCCCCCCGG AGGACAGCTCAGCACCAGCTCAGGCTAGGCCCTGACGTGTCCCCCTAAAGACAAATCATAAGCTCAGACC TCCGGGAAGCCACCGGGAACCACCCATTTCCTCCCCATGTTTGTCAAGCCGTCCTCAGGCGTTGACGACA ACCCCTCACCTCAAAAAACTTTTCATGGCACGCATACGGCTCAATAAAATAACAGGAGTCTATAAAAGCG TGGGGACAGTTCAGGAGGGGGCTCGCATCTCTCCTTCACGCGCCCGCCGCCTTACCTGAGGCCGCCATCC ACGCCGGTTGAGTCGCGTTCTGCCGCCTCCCGCCTGTGGTGCCTCCTGAACTACGTCCGCCGTCTAGGTA AGTTTAGAGCTCAGGTCGAGACCGGGCCTTTGTCCGGCGCTCCCTTGGAGCCTACCTAGACTCAGCCGGC TCTCCACGCTTTGCCTGACCCTGCTTGCTCAACTCTA
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