Details of Virus RNA

  Strain Information Strain Name
Human T-cell leukemia virus type 1
Strain Family
Primate t-lymphotropic virus 1
RNA Binding Site
5'UTR - 3'UTR
  Virus Information Virus Name
Human T-cell leukemia virus type 1 (HTLV-1)
Taxonomy ID 11908

Full list of proteins interacting with the 5'UTR - 3'UTR of this Strain

Protein Name Uniprot ID Host Species Pro Info Detection Method Infection Cell Cell ID Cell Originated Tissue Infection Time Interaction Score Fold Change
ATP-dependent RNA helicase DDX3X O00571 Homo sapiens Pro Info . B95a Cells (Marmoset lymphoblastoid cell line) . . . . .

Full list of Host ncRNAs interacting with the Virus RNA

HncRNA Host Species HncRNA Detail PMID Source Target Gene Target Gene ID Target Gene Source PMID Source
hsa-miR-146a-5p Homo sapiens HncRNA Info 19014482 ViRBase WASF2 . miRSponge 23435376 miRSponge

Virus RNA Sequence Information

>NC_001436.1 Human T-lymphotropic virus 1, complete genome GGCTCGCATCTCTCCTTCACGCGCCCGCCGCCTTACCTGAGGCCGCCATCCACGCCGGTTGAGTCGCGTT CTGCCGCCTCCCGCCTGTGGTGCCTCCTGAACTACGTCCGCCGTCTAGGTAAGTTTAGAGCTCAGGTCGA GACCGGGCCTTTGTCCGGCGCTCCCTTGGAGCCTACCTAGACTCAGCCGGCTCTCCACGCTTTGCCTGAC CCTGCTTGCTCAACTCTACGTCTTTGTTTCGTTTTCTGTTCTGCGCCGTTACAGATCGAAAGTTCCACCC CTTTCCCTTTCATTCACGACTGACTGCCGGCTTGGCCCACGGCCAAGTACCGGCAACTCTGCTGGCTCGG AGCCAGCGACAGCCCATTCTATAGCACTCTCCAGGAGAGAAATTTAGTACACAGTTGGGGGCTCGTCCGG GATTCGAGCGCCCCTTTATTCCCTAGGCAATGGGCCAAATCTTTTCCCGTAGCGCTAGCCCTATTCCGCG GCCGCCCCGGGGGCTGGCCGCTCATCACTGGCTTAACTTCCTCCAGGCGGCATATCGCCTAGAACCCGGT CCCTCCAGTTACGATTTCCACCAGTTAAAAAAATTTCTTAAAATAGCTTTAGAAACACCGGTCTGGATCT GCCCCATTAACTACTCCCTCCTAGCCAGCCTACTCCCAAAAGGATACCCCGGCCGGGTGAATGAAATTTT ACACATACTCATCCAAACCCAAGCCCAGATCCCGTCCCGCCCCGCGCCGCCGCCGCCGTCATCCTCCACC CACGACCCCCCGGATTCTGACCCACAAATCCCCCCTCCCTATGTTGAGCCTACAGCCCCCCAAGTCCTTC CAGTCATGCACCCACATGGTGCCCCTCCCAACCACCGCCCATGGCAAATGAAAGACCTACAGGCCATTAA GCAAGAAGTCTCCCAAGCGGCCCCTGGAAGCCCCCAGTTTATGCAGACCATCCGGCTTGCGGTGCAGCAG TTTGACCCCACTGCCAAAGACCTCCAAGACCTCCTGCAGTACCTTTGCTCCTCCCTCGTGGCTTCCCTCC ATCACCAGCAGCTAGATAGCCTTATATCAGAGGCCGAAACTCGAGGTATTACAGGTTATAACCCCTTAGC CGGTCCCCTCCGTGTCCAAGCCAACAATCCACAACAACAAGGATTAAGGCGAGAATACCAGCAACTCTGG CTCGCCGCCTTCGCCGCCCTGCCAGGGAGTGCCAAAGACCCTTCCTGGGCCTCTATCCTCCAAGGCCTGG AGGAGCCTTACCACGCCTTCGTAGAACGCCTCAACATAGCTCTTGACAATGGGCTGCCAGAAGGCACGCC CAAAGACCCCATTTTACGTTCCTTAGCCTACTCTAATGCAAACAAAGAATGCCAAAAATTACTACAGGCC CGAGGGCACACTAATAGCCCTCTAGGAGATATGTTGCGGGCTTGTCAGGCCTGGACCCCCAAAGACAAAA CCAAAGTGTTAGTTGTCCAGCCTAAAAAACCCCCCCCAAATCAGCCGTGCTTCCGGTGCGGGAAAGCAGG CCACTGGAGTCGGGACTGCACTCAGCCTCGTCCTCCCCCTGGGCCATGCCCCCTATGTCAAGATCCAACT CACTGGAAGCGAGACTGCCCCCGCCTAAAGCCCACTATCCCAGAACCAGAGCCAGAGGAGGATGCCCTCC TATTAGATCTCCCCGCCGACATCCCACACCCAAAAAACTCCATAGGGGGGGAGGTTTAACCTCCCCCCCC ACATTACAGCAAGTCCTTCCTAACCAAGACCCAACATCTATTCTGCCAGTTATACCGTTAGATCCCGCCC GTCGGCCCGTAATTAAAGCCCAGATTGACACCCAGACCAGCCACCCAAAGACTATCGAAGCTCTACTAGA TACAGGAGCAGACATGACAGTCCTTCCGATAGCCTTGTTCTCAAGTAATACTCCCCTCAAAAACACATCC GTGTTAGGGGCAGGGGGCCAAACCCAAGATCACTTTAAGCTCACCTCCCTTCCTGTGCTAATACGCCTCC CTTTCCGGACGACGCCTATTGTTTTAACATCTTGCCTAGTTGATACCAAAAACAACTGGGCCATCATAGG TCGTGATGCCTTACAACAATGCCAAGGCGTCCTGTACCTCCCTGAGGCAAAAAGGCCGCCTGTAATCTTG CCAATACAGGCGCCAGCTGTCCTTGGGCTAGAACACCTCCCAAGGCCCCCCGAAATCAGCCAGTTCCCTT TAAACCAGAACGCCTCCAGGCCTTGCAACACTTGGTCCGGAAGGCCCTGGAGGCAGGCCATATCGAACCC TACACCGGGCCAGGAAATAACCCAGTATTCCCAGTTAAAAAAGCCAATGGAACCTGGCGATTCATCCACG ACCTGCGGGCCACTAACTCTCTAACCATAGATCTCTCATCATCTTCCCCCGGGCCCCCTGACTTGTCCAG CCTGCCAACTACACTAGCCCACTTACAAACTATAGACCTTAAAGACGCCTTTTTCCAAATCCCCCTACCT AAACAGTTCCAGCCCTACTTTGCTTTCACTGTCCCACAGCAGTGTAACTACGGCCCCGGCACTAGATACG CCTGGAGAGTACTACCCCAAGGGTTTAAAAATAGTCCCACCCTGTTCGAAATGCAGCTGGCCCATATCCT GCAGCCCATTCGGCAAGCCTTCCCCCAATGCACTATTCTTCAGTACATGGATGACATTCTCCTGGCAAGC CCCTCCCATGCGGACCTGCAACTACTCTCAGAGGCCACAATGGCTTCCCTAATCTCCCATGGGTTGCCTG TGTCCGAAAACAAAACCCAGCAAACCCCTGGAACAATTAAGTTCCTAGGGCAAATAATTTCACCTAATCA CCTCACTTATGATGCAGTCCCCAAGGTACCTATACGGTCCCGCTGGGCGCTACCTGAACTTCAAGCCCTA CTTGGCGAGATTCAGTGGGTCTCCAAAGGAACTCCTACCTTACGCCAGCCCCTTCACAGTCTCTACTGTG CCTTACAAAGGCATACTGATCCCCGAGACCAAATATATTTAAATCCTTCTCAAGTTCAATCATTAGTGCA GCTGCGGCAGGCCCTGTCACAGAACTGCCGCAGTAGACTAGTCCAAACCCTGCCCCTCCTAGGGGCTATT ATGCTGACCCTCACTGGCACCACCACTGTGGTGTTCCAGTCCAAGCAGCAGTGGCCACTTGTCTGGCTAC ATGCCCCCCTACCCCACACTAGCCAGTGCCCCTGGGGGCAGCTACTTGCCTCAGCTGTGTTATTACTCGA CAAATACACCTTGCAATCCTATGGACTACTCTGCCAAACCATACATCATAACATCTCCACCCAAACCTTC AACCAATTCATTCAAACATCTGACCACCCCAGTGTTCCTATCTTACTCCACCACAGTCACCGATTCAAAA ATTTAGGTGCCCAGACTGGAGAACTTTGGAACACTTTTCTTAAAACAACTGCCCCATTGGCTCCTGTGAA AGCCCTTATGCCAGTGTTTACTCTTTCCCCTGTGATCATAAACACCGCCCCTTGCCTGTTTTCAGACGGA TCCACCTCCCAGGCAGCCTATATTCTCTGGGACAAGCATATATTGTCACAAAGATCATTCCCCCTTCCGC CACCGCACAAGTCGGCCCAACGGGCCGAACTTCTCGGACTTTTGCATGGCCTCTCCAGCGCCCGTTCGTG GCGCTGTCTCAACATATTTCTAGACTCCAAGTATCTTTATCATTACCTTCGGACCCTTGCCCTAGGCACC TTCCAAGGCAGGTCCTCTCAGGCCCCCTTTCAGGCCCTCCTGCCCCGCTTACTATCGCGTAAGGTCGTCT ATTTGCACCACGTTCGCAGCCATACCAATCTACCTGATCCCATCTCCAGGCTCAACGCTCTCACAGATGC CCTACTAATCACCCCTGTCCTGCAGCTCTCTCCTGCAGACCTACACAGTTTCACCCATTGCGGACAGACG GCCCTCACACTGCAAGGGGCAACCACAACTGAGGCCTCCAATATCCTGCGCTCTTGCCACGCCTGCCGCA AAAATAACCCACAACATCAGATGCCTCAAGGACACATCCGCCGTGGCCTACTCCCTAACCACATCTGGCA AGGCGACATTACCCATTTCAAATATAAAAATACACTGTATCGCCTTCATGTATGGGTAGACACCTTTTCA GGAGCCATCTCAGCTACCCAAAAGAGAAAAGAAACAAGCTCAGAAGCTATTTCCTCTTTGCTCCAGGCCA TTGCCTATCTAGGCAAGCCTAGCTACATAAACACAGACAATGGCCCTGCCTATATTTCCCAAGACTTCCT CAATATGTGTACCTCCCTTGCTATTCGCCATACTACCCATGTCCCCTACAATCCAACCAGCTCCGGACTT GTAGAACGCTCTAATGGCATTCTTAAAACCCTATTATATAAGTACTTTACTGACAAACCCGACCTACCTA TGGATAATGCTCTATCCATAGCCCTATGGACAATCAACCACCTAAATGTATTAACCAACTGCCACAAAAC CCGATGGCAGCTTCACCACTCCCCCCGACTCCAGCCGATCCCAGAGACACATTCCCTCAGCAATAAACAA ACCCATTGGTATTATTTCAAGCTTCCTGGTCTTAATAGCCGCCAGTGGAAAGGACCACAGGAGGCTCTTC AAGAAGCTGCCGGCGCTGCTCTCATCCCGGTAAGCGCTAGTTCTGCCCAGTGGATCCCGTGGAGGCTCCT CAAGCGAGCTGCATGCCCAAGACCCGTCGGAGGCCCCGCCGATCCCAAAGAAAAAGACCACCAACACCAT GGGTAAGTTTCTCGCCACTTTGATTTTATTCTTCCAGTTCTGCCCCCTCATCCTCGGTGATTACAGCCCC AGCTGCTGTACTCTCACAGTTGGAGTCTCCTCATACCACTCTAAACCCTGCAATCCTGCCCAGCCAGTTT GTTCATGGACCCTCGACCTGCTGGCCCTTTCAGCAGATCAGGCCCTACAGCCACCCTGCCCTAATCTAGT AAGTTACTCCAGCTACCATGCCACCTATTCCCTATATCTATTCCCTCATTGGATCAAAAAGCCAAACCGA AATGGCGGAGGCTATTATTCAGCCTCTTATTCAGACCCTTGTTCCTTAAAATGCCCATACCTAGGGTGCC AATCATGGACCTGCCCCTATACAGGAGCCGTCTCCAGCCCCTACTGGAAATTTCAGCAAGATGTCAATTT TACTCAAGAAGTTTCACACCTCAATATTAATCTCCATTTTTCAAAATGCGGTTTTTCCTTCTCCCTTCTA GTCGACGCTCCAGGATATGACCCCATCTGGTTCCTTAATACCGAACCCAGCCAACTGCCTCCCACCGCCC CTCCTCTACTCTCCCACTCTAACCTAGACCATATCCTCGAGCCCTCTATACCATGGAAATCAAAACTCCT GACTCTTGTCCAGTTAACCCTACAAAGCACTAATTATACTTGCATTGTCTGTATCGATCGTGCCAGCCTA TCCACTTGGCACGTCCTATACTCTCCCAACGTCTCTGTTCCATCCCCTTCTTCTACCCCCCTCCTTTACC CATCGTTAGCGCTTCCAGCCCCCCACCTGACGTTACCATTTAACTGGACCCACTGCTTTGACCCCCAGAT TCAAGCTATAGTCTCCTCCCCCTGTCATAACTCCCTCATCCTGCCCCCCTTTTCCTTGTCACCTGTTCCC ACGCTAGGATCCCGCTCCCGCCGAGCAGTACCGGTGGCGGTCTGGCTTGTCTCCGCCCTGGCCATGGGAG CCGGAGTGGCTGGCAGGATTACCGGCTCCATGTCCCTCGCCTCAGGAAAGAGCCTCCTACATGAGGTGGA CAAAGATATTTCCCAATTAACTCAAGCAATAGTCAAAAACCACAAAAATCTGCTCAAAATTGCACAGTAT GCTGCCCAGAACAGACGAGGCCTTGATCTCCTGTTCTGGGAGCAAGGAGGATTATGCAAAGCATTACAAG AACAGTGCTGTTTTCTAAATATTACTAATTCCCATGTCTCAATACTACAAGAGAGACCCCCCCTTGAAAA TCGAGTCCTGACTGGCTGGGGCCTTAACTGGGACCTTGGCCTCTCACAGTGGGCTCGAGAAGCCTTACAA ACTGGAATCACCCTTGTCGCGCTACTCCTTCTTGTTATCCTTGCAGGACCATGCATCCTCCGTCAGCTAC GACACCTCCCCTCGCGCGTCAGATACCCCCATTACTCTCTTATAAACCCTGAGTCATCCCTGTAAACCAA GCACACAATTATTGCAACCACATCGCCTCCAGCCTCCCCTGCCAATAATTAACCTCTCCCATCAAATCCT CCTTCTCCTGCAGCAACCTCCTCCGTTCAGCCTCCAAGGACTCCACCTCGCCTTCCAACTGTCTAGTATA GCCATCAACCCCCAACTCCTGCATTTTTTCTTTCCTAGCACTATGCTGTTTCGCCTTCTCAGCCCCTTGT CTCCACTTGCGCTCACGGCGCTCCTGCTCTTCCTGCTTTCTCCGGGCGAAGTCAGCGGCCTTCTCCTCCG CCCGCTTCCTGCGCCGTGCCTTCTCCTCTTCCTTCCTTTTCAAATACTCAGCAATCTGCTTTTCCTCCTC TTTCTCCCGCTCTTTTTTTCGCTTCCTCTTCTCCTCAGCCCGTCGCTGCCGATCACGATGCGTTTCCCCG CGAGGTGGCGCTTTCCCCCCTGGAGGGCCCCGTCGCAGCCGGCCGCGGCTTTCCTCTTCTAGAGATAGCA AACCGTCAAGCACAGTTTCCTCCTCCTCCTTGTCCTTTAACTCTTCCTCCAAGGATAATAGCCCGTCCAC CAATTCCTCCACCAGCAGGTCCTCCGGGCATGGAACAGGCAAACATCGAAACAGCCCTACGGATACAAAG TTAACCATGCTTATTATCAGCCCACTTCCCAGGGTTTGGACAGAGTCTTCTTTTCGGATACCCAGTCTAC GTGTTTGGAGACTGTGTACAAGGCGACTGGTGCCCCATCTCTGGGGGACTATGTTCGGCCCGCCTACATC GTCACGCCCTACTGGCCACCTGTCCAGAGCATCAGATCACCTGGGACCCCATCGATGGACGCGTTATCGG CTCAGCTCTACAGTTCCTTATCCCTCGACTCCCCTCCTTCCCCACCCAGAGAACCTCTAAGACCCTTAAG GTCCTTACCCCGCCAATCACTCATACAACCCCCAACATTCCACCCTCCTTCCTCCAGGCCATGCGCAAAT ACTCCCCCTTCCGAAATGGATACATGGAACCCACCCTTGGGCAGCACCTCCCAACCCTGTCTTTTCCAGA CCCCGGACTCCGGCCCCAAAACCTGTACACCCTCTGGGGAGGCTCCGTTGTCTGCATGTACCTCTACCAG CTTTCCCCCCCCATCACCTGGCCCCTCCTGCCCCATGTGATTTTTTGCCACCCCGGCCAGCTCGGGGCCT TCCTCACCAATGTTCCCTACAAACGAATAGAAAAACTCCTCTATAAAATTTCCCTTACCACAGGGGCCCT AATAATTCTACCCGAGGACTGTTTGCCCACCACCCTTTTCCAGCCTGCTAGGGCACCCGTCACGCTGACA GCCTGGCAAAACGGCCTCCTTCCGTTCCACTCAACCCTCACCACTCCAGGCCTTATTTGGACATTTACCG ATGGCACGCCTATGATTTCCGGGCCCTGCCCTAAAGATGGCCAGCCATCTTTAGTACTACAGTCCTCCTC CTTTATATTTCACAAATTTCAAACCAAGGCCTACCACCCCTCATTTCTACTCTCACACGGCCTCATACAG TACTCTTCCTTTCATAATTTGCATCTCCTATTTGAAGAATACACCAACATCCCCATTTCTCTACTTTTTA ACGAAAAAGAGGCAGATGACAATGACCATGAGCCCCAAATATCCCCCGGGGGCTTAGAGCCTCTCAGTGA AAAACATTTCCGTGAAACAGAAGTCTGAGAAGGTCAGGGCCCAGAATAAGGCTCTGACGTCTCCCCCCGG AGGACAGCTCAGCACCAGCTCAGGCTAGGCCCTGACGTGTCCCCCTAAAGACAAATCATAAGCTCAGACC TCCGGGAAGCCACCGGGAACCACCCATTTCCTCCCCATGTTTGTCAAGCCGTCCTCAGGCGTTGACGACA ACCCCTCACCTCAAAAAACTTTTCATGGCACGCATACGGCTCAATAAAATAACAGGAGTCTATAAAAGCG TGGGGACAGTTCAGGAGGGGGCTCGCATCTCTCCTTCACGCGCCCGCCGCCTTACCTGAGGCCGCCATCC ACGCCGGTTGAGTCGCGTTCTGCCGCCTCCCGCCTGTGGTGCCTCCTGAACTACGTCCGCCGTCTAGGTA AGTTTAGAGCTCAGGTCGAGACCGGGCCTTTGTCCGGCGCTCCCTTGGAGCCTACCTAGACTCAGCCGGC TCTCCACGCTTTGCCTGACCCTGCTTGCTCAACTCTA
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