Virus General Information

  Virus Name
Human immunodeficiency virus type 1 (HIV-1)
  Strains
(strain JR-CSF)
  Lineage
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
  Virus Molecule Type
ssRNA-RT
  Sequence ID
U43141.1
  Genome Type
Non-segmented
  Related Host Homo sapiens
  Related Disease Acquired immunodeficiency syndrome (AIDS)
  External Link
 Taxon ID 11676
 Virus-Host DB https://www.genome.jp/virushostdb/11676
 KEGG GENOME ID T40001
 KEGG BRITE ID NC_001802
 ICTV ID 202105030

Virus Virion and Genome Information

    Virion Information
Enveloped, spherical to pleomorphic in shape, 80-100 nm in diameter.
    GENOME Information
Monopartite, linear, dimeric, ssRNA(+) genome of about 7-11 kb,, with a 5'-cap and a 3'poly-A tail. There are two long terminal repeats (LTRs) at the 5' and 3' ends. The LTRs contain the U3, R, and U5 regions. There are also a primer binding site (PBS) at the 5'end and a polypurine tract (PPT) at the 3'end.

Virus-RNA -- Host-Protein Interaction

RNA Binding Site RNA Detail Protein Name Host Species Uniprot ID Protein Detail
5'UTR - 3'UTR RNA Info C-C chemokine receptor type 5 Homo sapiens P51681 Pro Info
5'UTR - 3'UTR RNA Info CD166 antigen Homo sapiens Q13740 Pro Info
5'UTR - 3'UTR RNA Info PAPS transporter 1 Homo sapiens Q8TB61 Pro Info
5'UTR - 3'UTR RNA Info Protein-tyrosine sulfotransferase 2 Homo sapiens O60704 Pro Info
5'UTR - 3'UTR RNA Info T-cell surface glycoprotein CD4 Homo sapiens P01730 Pro Info

Virus Sequence Information

>U43141.1 Human immunodeficiency virus type 1 complete genome AAGCTTGCCTTGAGTGCTTCAAGTAGTGTGTGCCCGTCTGTTGTGTGACTCTGGTAGCTAGAGATCCCTC AGATCCTTTTAGTCAGTGTGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAGCGAAAGTAGA ACCAGAGGAGATCTCTCGACGCAGGACTCGGCTTGCTGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGA CTGGTGAGTACGCCAAAATTTTGACTAGCGGAGGCTAGAAGGAGAGAGATGGGTGCGAGAGCGTCAGTAT TAAGCGGGGGAGAATTAGACAAATGGGAAAAAATTCGGTTAAGGCCAGGGGGAAAGAAAAAATATCAATT AAAACATATAGTATGGGCAAGCAGGGAGCTAGAACGATTCGCAGTTAATCCTGGCCTGTTAGAAACATCA GAAGGCTGTAGACAGATAATGGGACAGCTACAACCGTCCCTTCAGACAGGATCAGAAGAACTTAGATCAT TATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAAGATAGAGGTAAAAGACACCAAGGAAGCTTT AGACAAGGTAGAGGAAGAGCAAAACAACAGTAAGAAAAAGGCACAGCAAGAAGCAGCTGACGCAGGAAAC AGAAACCAGGTCAGCCAAAATTACCCTATAGTGCAAAACCTACAGGGACAAATGGTACATCAGGCCATAT CACCTAGAACTTTAAATGCATGGGTAAAAGTAGTGGAAGAGAAGGCTTTCAGCCCAGAAGTAATACCCAT GTTTTCAGCATTATCAGAAGGAGCCACCCCACAAGATTTAAACACCATGCTAAACACAGTGGGGGGACAT CAAGCAGCCATGCAAATGTTAAAAGAAACCATCAATGAGGAAGCTGCAGAATGGGATAGATTGCACCCAG TGCATGCAGGGCCTATTGCACCAGGCCAGATGAGAGAACCAAGGGGAAGTGACATAGCAGGAACTACTAG TACCCTTCAGGAACAAATAGGATGGATGACAAATAATCCACCTATCCCAGTAGGAGAAATATATAAGAGA TGGATAATCCTGGGATTAAATAAAATAGTAAGAATGTATAGCCCTACCAGCATTCTGGATATAAAACAAG GACCAAAAGAACCCTTTAGAGATTATGTAGACCGGTTCTATAAAACCCTAAGAGCCGAGCAAGCTACACA GGAAGTAAAAAATTGGATGACAGAAACCTTGTTGGTCCAAAATGCGAATCCAGATTGTAAGACTATTTTA AAAGCATTAGGACCAGCAGCTACACTAGAAGAAATGATGACAGCATGTCAGGGAGTGGGGGGACCCGGCC ATAAAGCAAGAGTTTTGGCTGAAGCAATGAGCCAAGTAACAGGTTCAGCTGCCATAATGATGCAGAGAGG CAATTTTAGGAACCAAAGAAAGACTGTTAAGTGTTTCAATTGTGGCAAAGAAGGGCACATAGCCAGAAAT TGCAGGGCCCCTAGGAAAAAGGGCTGTTGGAAATGTGGAAAGGAAGGACATCAAATGAAGGATTGCACAG AAAGACAGGCTAATTTTTTAGGGAAGATCTGGCCTTCCCACAAGGGGAGGCCAGGAAATTTTCTTCAGAG CAGACCAGAGCCAACAGCCCCACCAGAAGAGAGCTTCAGGTTTGGGGAAGCAACAGCTCCCTCTCAGAAG CAGGAGCCGATAGACAAGGAACTGTATCCCTTAGCCTCCCTCAAATCACTCTTTGGCAGCGACCCCTCGT CACAATAAAGATAGGGGGGCAACTAAAGGAAGCTCTATTAGATACAGGAGCAGATGATACAGTAGTAGAA GAAATGAGTTTGCCAGGAAGATGGAAACCAAAAATGATAGGAGGAATTGGAGGTTTTATCAAAGTAAGAC AGTATGATCAGATACTCGTAGAAATCTGTGGACATAAAGCTATAGGTACAGTATTAGTAGGACCTACACC TGTCAACATAATTGGAAGAAATCTGTTGACTCAGATTGGTTGCACTTTAAATTTTCCCATTAGTCCTATT GAAACTGTACCAGTAAAATTAAAGCCAGGAATGGATGGCCCAAAAGTTAAACAATGGCCATTGACAGAAG AAAAAATAAAAGCATTAATAGAAATTTGTACAGAAATGGAAAAGGAAGGGAAAATTTCAAAAATTGGGCC TGAAAATCCATACAATACTCCAGTATTTGCCATAAAGAAAAAGGACAGTACTAAATGGAGAAAATTAGTA GATTTCAGAGAACTTAATAAAAGAACTCAAGATTTCTGGGAAGTTCAATTAGGAATACCACATCCCGCAG GGTTAAAAAAGAAAAAATCAGTAACAGTCCTGGATGTGGGTGATGCATATTTTTCAGTTCCCCTAGATAA AGACTTCAGAAAATATACTGCATTTACCATACCTAGTATAAACAATGAGACACCAGGGATTAGATATCAG TACAATGTGCTTCCACAGGGATGGAAAGGATCACCAGCAATATTCCAAAGTAGCATGACAAAAATCTTAG AGCCTTTTAGAAAACAAAATCCAGACATAGTTATCTATCAATACATGGATGATTTGTATGTAGGATCTGA CTTAGAAATAGAGCAGCATAGAACAAAAATAGAGGAACTGAGACAGCATCTGTTGAAGTGGGGATTTACC ACACCAGACAAAAAACATCAGAAAGAACCTCCATTCCTTTGGATGGGTTATGAACTCCATCCTGATAAAT GGACAGTACAGCCTATAGTGCTGCCAGAAAAAGACAGCTGGACTGTCAATGACATACAGAAGTTAGTGGG AAAATTGAATTGGGCAAGTCAGATTTATGCAGGGATTAAAGTAAAGCAATTATGTAAGCTACTTAGGGGA CCCAAAGCACTAACAGAAGTAATACCACTAACAAAAGAAGCAGAGCTAGAACTAGCAGAAAACAGGGAGA TTCTAAAAGAACCAGTACATGGAGTGTATTGTGACCCATCAAAAGACTTAGTAGCAGAAATACAGAAGCA GGGGGAAGGCCAATGGACATATCAAATTTATCAAGAACCATTTAAGAATCTGAAAACAGGAAAGTATGCA AGAATGAGGGGTGCCCACACTAATGATATAAAACAGTTAACAGAGGCAGTGCAAAAAATAGCCACAGAAG GCATAGTAATATGGGGAAAGACTCCTAAATTTAGACTACCCATACAAAAGGAAACATGGGAAGCATGGTG GACGGAGTATTGGCAAGCCACCTGGATTCCTGAGTGGGAGTTTGTCAATACCCCTCCCTTAGTGAAATTA TGGTACCAGTTAGAGAAAGAACCCATAGTAGGAGCAGAAACTTTCTATGTAGATGGGGCAGCTAATAGGG AGACTAAATTAGGAAAAGCAGGATATGTTACTGACAGGGGAAGACAAAAAGTTGTCTCCCTAAATGACAC AACAAATCAGAAGACTGAGTTACAAGCAATTCATCTAGCTTTGCAGGATTCGGGACTAGAAGTAAACATA GTAACAGACTCACAATATGCATTAGGAATCATTCAAGCACAACCAGATAAAAGTGAATCAGAGTTAGTCA GTCAAATAATAGAGCAGTTAATAAAAAAGGAAAAGGTCTACCTGGCATGGGTACCAGCACACAAAGGAAT TGGAGGAAATGAACAAGTAGATAAATTAGTCAGTGCTGGAATCAGAAAAGTACTATTTTTAGATGGAATA GATAAGGCCCAAGAAGACCATGAGAAATATCACAGTAATTGGAGAGCAATGGCTAATGATTTTAACCTGC CACCTGTAGTAGCAAAAGAAATAGTAGCCAGCTGTGATAAATGTCAGCTAAAAGGAGAAGCCATGCATGG ACAAGTAGACTGTAGTCCAGGAATATGGCAACTAGATTGTACACATTTAGAAGGAAAAATTATCCTGGTA GCAGTTCATGTAGCTAGTGGATATATAGAAGCAGAAGTCATTCCAGTAGAGACAGGGCAGGAAACAGCAT ATTTTCTCTTAAAATTAGCAGGAAGATGGCCAGTAAAAACAGTACATACAGACAATGGCCCTAATTTCAC CAGTACTACGGTTAAGGCCGCCTGTTGGTGGGCAGGGATCAAGCAGGAATTTGGCATTCCCTACAATCCC CAAAGTCAAGGGGTAGTAGAATCTATGAATAAAGAGTTAAAGAAAATTATAGGACAGGTAAGAGATCAGG CTGAACATCTTAAGACAGCAGTACAAATGGCAGTATTCATCCACAATTTTAAAAGAAAAGGGGGGATTGG GGGGTACAGTGCAGGGGAAAGAATAGTAGACATAATAGCAACAGACATACAAACTAAAGAATTACAAAAA CAAATTACAAAAATTCAAAATTTTCGGGTTTATTACAGGGACAGCAGAGAACCATTTTGGAAAGGACCAG CAAAGCTTCTCTGGAAAGGTGAAGGGGCAGTAGTAATACAAGATAATAGTGACATAAAAGTAGTGCCAAG AAGAAAAGCAAAGATCATTAGGGATTATGGAAAACAGATGGGCAGTGATGATTGTGTGGCAAGTAGACAG GATGAGGATTAGAACATGGAACAGTTTAGTAAAACACCATATATATTGTTCACGGAAAGCTAAGAACTGG GTTTATAGACATCACTATGAAAGCACTAATCCAAGAGTAAGTTCAGAAGTACACATCCCACTAGGGGAAG CTAAATTGGTAATAACAACATATTGGGGTCTGCATACAGGAGAAAGAGACTGGCATTTGGGCCAGGGAGC CTCCATAGAATGGAGGAAAAGGAGATATAGCACACAAGTAGACCCTAACCTAGCAGACCAACTAATTCAC CTGTATTATTTTGATTGTTTTTCAGAATCTGCTATAAGAAATGCCATATTAGGACGTATAGTTAGTCCTA GGTGTGAATATCAAGCAGGACATAGCAAGGTAGGATCTCTACAATACTTGGCACTAGCAGCATTAACAAC ACCAAAAAAGATAAAGCCACCTTTGCCTATTGTTACAAAACTGACAGAAGATAGATGGAACAAGCCCCAG AAGACCAAGGGCCACAGAGGGAGCCATACAATGCATGGACACTAGAGCTTTTAGAGGAGCTTAAGAGTGA AGCTGTTAGACATTTTCCCAGGATATGGCTACATAGCTTAGGACAATATATCTATGAAACTTATGGGGAT ACTTGGGCAGGAGTAGAAGCCATAATAAGAATACTGCAACAACTGCTGTTTATTCATTTCAGAATTGGGT GTCGCCATAGCAGAATAGGCATTACTCCACAGAGGAGAGCAAGAAATGGAGCCAGTAGATCCTAGACTAG AGCCCTGGAAGCATCCAGGAAGTCAGCCTAGGACCCCTTGTACCAATTGCTATTGTAAAAAGTGTTGCCT TCATTGCCAAGTTTGTTTCACAAGAAAAGGCTTAAGCATCTCCTATGGCAGGAAGAAGCGGAGACAGCGA CGAAGAGCTCCTCAAGACAGTCAGACTCATCAAGTTTCTCTACCAAAGCAGTAAGTAGTACATGTGATGT TATCTTTACAAATAGCAGCAATAGTAGCATTAGTAGTAGCAGCAATAATAGTAATAGTTGTGTGGACCAT AGTAGTCATAGAATATAGGAAATTATTAAGACAAAGAAAAATAAACAGGTTAATTGATAGACTAACAGAA AGAGCAGAAGACAGTGGCAATGAAAGTGAAGGAGACCAGGAAGAATTATCAGCGCTTGTGGAGAGGGGGC ACCTTGCTCCTTGGGATGTTAATGATCAGTAGTGTTGCAGGAAACTTGTGGGTCACAGTCTATTATGGGG TACCTGTGTGGAAAGAAGCAACTACCACTCTATTTTGTGCATCAGATGCTAAAGCTTATGATACAGAGGT ACATAATGTTTGGGCCACACATGCCTGTGTACCCACAGACCCCAACCCACAAGAAGTAGTAATGGGAAAT GTGACAGAAAATTTTAACATGTGGAAAAATGACATGGTAGAACAGATGCAGGAAGATATAATCAGTTTAT GGGATCAAAGCCTAAAGCCATGTGTAAAATTAACCCCACTCTGTGTTACTTTAAAATGCACTGATTATAA TAATGCCACTAACAGTAGTTGGGGAAGGATGGAGAAAGGAGAAATACAAAACTGCTCTTTCAAGGTCACC ACAAACATAAGAGATAAGGTACAGAAAGAATCTGCACTTTTTTATAAAACTGATGTAGTACCAATAGATA ATAATAAGACTAGTAATAGGGATAATACTACCAGCTATATGTTGATACATTGTAATAGATCTGTCATTAC ACAAGCCTGTCCAAAGGTATCCTTTGAGCCAATTCCCATACATTATTGTGCCCCAGCTGGTTTTGCGATT TTAAAGTGTAATGATAAAAAGTTCAATGGAAAAGGACCATGTAAAAATGTCAGCACAGTACAGTGTACAC ATGGAATTAGGCCAGTAGTGTCAACTCAACTGCTGTTAAATGGTAGTCTAGCAGAAAAAGAAGTAGTAAT TAGATCTGACAATTTCACAGATAATACTAAAACCATAATAGTACATCTGAACGAATCTGTAGAAATTAAT TGTACAAGACCCAACAACAATACAAGAAAAGGTATACATATAGGACCAGGGAGAGCAGTTTATACGACAG GAAGAATAGTAGGAGATATAAGACTAGCACATTGTAACATTAGTAGAGCAAGATGGAATAAAACTCTAAA CCAAATATTTAGAAAATTAAGAGAAATTAGACAATTTGAAAATAAAACAATAGTCTTTAATCGATCCTCA GGAGGAGACCCAGAAATTGTAATGCACAGCTTTAATTGTGGAGGGGAATTTTTCTACTGTAATTCAACAA AACTGTTTAATAGTACTTGGAATAATACTAGTACTTGGAATGATAATGGAAATGACACTATCATACTGCC ATGTAGAATAAAACAAATTATAAACATGTGGCAGGAAGTAGGAAAAGCAATGTATGCCCCTCCCATTGGA GGACTAATTAGATGTTCATCAAATATTACAGGGCTGATATTAACAAGAGATGGTGGTAATGATAACAGTA GTACCACCGAGATCTTCAGACCTGGAGGGGGAAATATGAGGGACAATTGGAGAAATGAATTATATAAATA TAAAGTAGTAAAAATTGAACCATTAGGAGTAGCACCCACCAAGGCAAAGAGAAGAGTGGTGCAGAGAGAA AAAAGAGCGGTGGGAATGCTAGGAGCTATGTTCCTTGGGTTCTTGGGAGCAGCAGGAAGCACTATGGGCG CACGGTCACTGACGCTGACGGTACAGGCCAGACAATTATTGTCTGGTATAGTGCAACAGCAAAACAATTT GCTGAGAGCTATTGAGGCGCAACAACATCTGTTGCAACTCACAGTCTGGGGCATCAAACAGCTCCAGGCA AGAGTCCTGGCTGTGGAAAGATACCTAAGGGATCAACAGCTCCTAGGGATTTGGGGTTGCTCTGGAAAAC TCATCTGCACCACTACTGTGCCTTGGAATGCTAGTTGGAGTAATAAAACCCTGGATCAGATTTGGAATAA CATGACCTGGATGGAGTGGGAAAGAGAAATTGACAATTACACAAGCTTAATATATACCTTAATTGAACAA TCGCAAAACCAACAAGAAAAGAATGAACAAGAATTATTGGAATTGGATAAGTGGGCAAGTTTGTGGAGTT GGTATGACATATCAAATTGGCTGTGGTATATAAAAATATTCATAATGATAGTAGGAGGCTTGATAGGTTT AAGAATAGTTTTTGCTGTGCTTTCTATAGTGAATAGAGTTAGGCAGGGATACTCACCATTGTCGTTTCAG ACCCTCCTCCCAGCAACGAGGGGACCCCGACAGCCCGAAGAAATCGAAGAAGAAGGTGGAGAGAGAGACA GAGGCAGATCCGTTCGATTAGTGAGCGGATTCTTAGCACTTTTCTGGGACGACCTGCGGAGCCTGTGCCT CTTCAGCTACCGCCGCTTGAGAGACTTACTCTTGATTGTAGCGAAGATTGTGGAAACTCTGGGACGCAGG GGGTGGGAAGTCCTCAAGTATTGGTGGAATCTCCTGCAGTATTGGAGCCAGGAACTAAAGAATAGTGCTG TCAGCTTGTTCAATACTATAGCTATAGCAGTAGCTGAGGGAACAGATAGGGTTATAGAAGTAGTACAAAG AGCTTGTAGAGCAATTCTCCACATACCTAGAAGAGTGAGACAGGGCTTGGAAAGGGCCTTGCTATAAAAT GGGTGGCAAGTGGTCAAAATGTAGTGGATGGCCTACTGTAAGGGAAAGAATGAAACAAGCTGAGCCTGAG CCAGCAGCAGATGGGGTGGGAGCAGCATCTCGAGACCTGAAAAAACATGGAGCAATCACAAGTAGCAATA CAGCAACTAATAACGCTGCTTGTGCCTGGCTAGAAGCACAAGAGGAAGAGGAAGAGGGTTTTCCAGTCAG ACCACAGGTACCTTTAAGACCAATGACTTACAAGGGAGCTTTAGATCTTAGCCACTTTTTAAAAGAAAAG GGGGGACTGGAAGGGTTAATTTACTCCCCAAAAAGACAAGAGATCCTTGATCTGTGGGTCTACCACACAC AAGGCTACTTCCCTGATTGGCAGAACTACACACCAGGGCCAGGGGTCAGATATCCACTGACCTTTGGATG GTGCTTCAAGTTAGTACCAGTTGAACCAGATGAAGAAGAGAACAGCAGCCTGTTACACCCTGCGAGCCTG CATGGGACAGAGGACACGGAGAGAGAAGTGTTAAAGTGGAAGTTTGACAGCCATCTAGCATTTCATCACA AGGCCCGAGAGCTGCATCCGGAGTACTACAAAGACTGCTGACACCGAGTTTTCTACAAGGGACTTTCCGC TGGGGACTTTCCAGGGAGGCGTGACCTGGGCGGGACTGGGGAGTGGCTGGGGAGTGGCGAGCCCTCAGAT GCTGCATATAAGCAGCCGCTTTTTGCCTGTACTGGCTCTCTCTGGTTAGACCAGATCTGAGCCTGGGAGC TCTCTGGCTAGCTAGGGAACCCACTGCTTAAGCCTCAATAAAGCTT
    Click to Show/Hide