Virus General Information

  Virus Name
Hepatitis C virus subtype 1b (HCV 1b)
  Lineage
Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Flasuviricetes; Amarillovirales; Flaviviridae; Hepacivirus; Hepacivirus C; Hepatitis C virus genotype 1
  Virus Molecule Type
ssRNA(+)
  Sequence ID
OM222702.1
  Genome Type
Non-segmented
  Related Host Homo sapiens
  External Link
 Taxon ID 31647
 Virus-Host DB https://www.genome.jp/virushostdb/31647

Virus Virion and Genome Information

    Virion Information
Enveloped, spherical, about 50 nm in diameter. Mature virions contain two virus-encoded membrane proteins (E1 and E2) in addition to the capsid protein.
    GENOME Information
Monopartite, linear, ssRNA(+) genome of about 10 kb. The genome 3' terminus is not polyadenylated but forms a loop structure. There is an internal ribosome entry site (IRES) at the 5' end that mediates translation initiation.

Virus-RNA -- Host-Protein Interaction

RNA Binding Site RNA Detail Protein Name Host Species Uniprot ID Protein Detail
5'UTR - 3'UTR RNA Info Interleukin enhancer-binding factor 2 Homo sapiens Q12905 Pro Info
5'UTR - 3'UTR RNA Info Interleukin enhancer-binding factor 3 Homo sapiens Q12906 Pro Info

Virus-RNA -- Host-ncRNA Interaction

RNA Binding Site RNA Detail HncRNA Name Host Species External Link HncRNA Detail
5'UTR - 3'UTR RNA Info hsa-miR-122-5p Homo sapiens miRBase HncRNA Info
5'UTR - 3'UTR RNA Info hsa-miR-196a-1-3p Homo sapiens miRBase HncRNA Info
5'UTR - 3'UTR RNA Info hsa-miR-196a-3p Homo sapiens miRBase HncRNA Info
5'UTR - 3'UTR RNA Info hsa-miR-196a-5p Homo sapiens miRBase HncRNA Info
5'UTR - 3'UTR RNA Info hsa-miR-196b-3p Homo sapiens miRBase HncRNA Info
5'UTR - 3'UTR RNA Info hsa-miR-196b-5p Homo sapiens miRBase HncRNA Info
5'UTR - 3'UTR RNA Info hsa-miR-199a-3p Homo sapiens miRBase HncRNA Info

Virus Sequence Information

>OM222702.1 Hepatitis C virus subtype 1b isolate GLT1, complete genome GCCAGCCCCCGATTGGGGGCGACACTCCACCATAGATCACTCCCCTGTGAGGAACTACTGTCTTCACGCA GAAAGCGTCTAGCCATGGCGTTAGTATGAGTGTCGTGCAGCCTCCAGGACCCCCCCTCCCGGGAGAGCCA TAGTGGTCTGCGGAACCGGTGAGTACACCGGAATTGCCAGGACGACCGGGTCCTTTCTTGGATCAACCCG CTCAATGCCTGGAGATTTGGGCGTGCCCCCGCGAGACTGCTAGCCGAGTAGTGTTGGGTCGCGAAAGGCC TTGTGGTACTGCCTGATAGGGTGCTTGCGAGTGCCCCGGGAGGTCTCGTAGACCGTGCACCATGAGCACG AATCCTAAACCTCAAAGAAAAACCAACCGTAACACCAACCGCCGCCCACAGGACGTCAAGTTCCCGGGTG GTGGTCAGATCGTTGGTGGAGTTTACCTGTTGCCGCGCAGGGGCCCCAGATTGGGTGTGCGCGCGACTAG GAAGACTTCCGAGCGGTCGCAACCTCGTGGAAGGCGACAACCTATCCCCAAGGCTCGCCAGCCCGAGGGC AGGGCCTGGGCTCAGCCCGGGTACCCTTGGCCCCTCTATGGCAATGAGGGCATGGGGTGGGCAGGATGGC TCCTGTCACCCCGCGGCTCTCGGCCTAGTTGGGGCCCCACGGACCCCCGGCGTAGGTCGCGTAATTTGGG TAAGGTTATCGATACCCTCACATGCGGCTTCGCCGACCTCATGGGGTACATTCCGCTCGTCGGCGCTCCC CTAGGGGGCGCTGCTAGGGCCCTGGCGCATGGCGTCCGGGTTTTAGAAGACGGCGTGAATTATGCAACAG GGAATCTGCCCGGTTGCTCTTTCTCTATCTTCCTCTTGGCTCTGCTGTCCTGCTTGACCATCCCAGCATC CGCTTATGAAGTGCGCAACGTGTCCGGGGTGTACCACGTCACGAACGATTGCTCCAACGCGAGTATCGTG TATGAGGTGGAGGACATGATCATGCACACCCCCGGGTGCGTGCCCTGCGTTCGGGAGAACAACTCCTCCC GTTGCTGGGTAGCGCTTACCCCCACGCTTGCGGCCAGGAACTCCAGCATCCCCACTGCGACAATACGACG CCACGTCGATTTGCTCGTTGGGGCGGCTGCTTTCTGCTCCGCCATGTACGTGGGGGATCTCTGCGGATCT GTTTTCCTTGTCTCCCAGCTGTTCACCTTCTCGCCCCGCCGGCATGAGACAGTGCAAGACTGCAATTGTT CAATCTATCCTGGCCACGTATCAGGTCACCGCATGGCTTGGGATATGATGATGAACTGGTCACCTACAGC AGCTTTAGTGGTATCGCAGTTACTCCGACTCCCACAAGCTATCGTGGACATGGTGGCGGGGGCCCACTGG GGAGTCCTGGCGGGCCTTGCCTACTATTCCATGGTGGGGAACTGGGCTAAGGTTTTGATTGTGATGCTAC TCTTTGCCGGCGTTGACGGAGAAACCCATGTGACAGGGGCGACGCAAGGCCGTGCTGCCAGCTCATTCAC AGCCCTCTTTTCATCTGGGGCGTCTCAGAAGATCCAGCTTGTAAACACCAACGGCAGTTGGCACATCAAC AGAACTGCCTTGAACTGCAATGACTCCCTCCAAACTGGGTTCCTTGCCGCGCTGTTCTATAAGCACAGGT TCAACGCCTCCGGGTGCCCAGAACGCATGGCCAGCTGCCACCCCATCAACGAATTTGATCAGGGGTGGGG TCCCATCACTTACGCTGGGCCTAGCGGCTTGGACCAGAGGCCTTACTGTTGGCACTACGCACCTCAACCG TGTGGTATCGTGCCCGCGTCGCAGGTGTGTGGCCCGGTGTATTGCTTCACCCCAAGCCCTGTTGTGGTGG GGACGACTGATCGGTCCGGCGCCCCAACGTACAACTGGGGGGAGAATGAGACGGACGTGCTGCTCCTCAA CAACACGCGGCCGCCGCAGGGCAACTGGTTCGGCTGTACATGGATGAATGGCACTGGGTTCACCAAGACG TGCGGGGGCCCCCCGTGCGACATCGGGGGGGCCGGCAACAACACCTTGATCTGTCCCACGGACTGCTTCC GGAAGCACCCCGAGGCCACTTACGCCAAGTGCGGTTCTGGGCCTTGGTTAACACCTAGGTGCTTGGTTGA CTACCCATACAGGCTTTGGCACTACCCCTGCACCGTTAACTTCACCATCTTCAAGATCAGGATGTATGTG GGGGGCGTGGAGCACAGGCTCGACGCCGCGTGCAATTGGACTCGAGGAGAGCGTTGTGACTTGGAGGACA GGGATAGATCAGAGCTTAGCCCACTGCTCTTGTCTACGACAGAGTGGCAGGTATTGCCCTGCTCCTTCAC CACCCTACCCGCTTTGTCCACTGGCTTGATCCACCTTCATCAGAACATCGTGGACGTGCAATACCTGTAC GGTGTAGGGTCGGCAATTGTCTCCTTTGTCATCAAATGGGAGTATGTCCTGTTGCTCTTCCTTCTCCTGG CAGACGCGCGCGTCTGTGCTTGCCTATGGATGATGGTGATGATAGCCCAGGCTGAGGCCGCCTTGGAGAA CCTGGTGGTCCTCAACGCGGCGTCCCTGGCCGGAGCGCACGGCACCCTCTCCTTCCTCCTGTTCTTCTGT GCCGCCTGGTACATCAAGGGCAGGCTGATCCCTGGGGCGGCATATGCTATCTACGGCGTATGGCCGCTGC TCTTGCTCCTGCTGGCATTACCTCCACGAACATACGCCATGGACCGGGAGATGGCTGCGTCATGCGGAGG CGGGGTTTTTGTAGGCCTGGTTCTTTTGACCTTGTCACCACACTATAAAGTGTTCCTCGCTAAGCTCATA TGGTGGTTGCAGTATCTTATCACCAGAGCTGAGGCGTGCTTACAAGTGTGGATCCCCCCCCTTAACATCC GGGGGGGCCGCGACGCCATCATCCTCCTCACGTGCGTGATCCACCCAGAGCTAATCTTTGACATCACCAA GCTCTTGCTCGCCATACTCGGTCCAGTCATGGTGTTCCAGGCCGGTATAACCAGAGTGCCGTACTTTGTG CGCGCTCAGGGGCTCATTCGCGCATGCGCGCTGGTGCGGAAAGCCGCTGGGGGTCAGTATGTTCAGATGG CTCTCATGAAGCTGGCCGCACTGACGGGTACGTACGTTTATGACCATCTTACTCCACTGCGGGACTGGGC CCACGCGGGCCTGCGAGACCTCGCGGTGGCAGTCGAGCCCGTCGTCTTCTCCGACATGGAAACCAAGATC ATTACCTGGGGGGCAGACACCGCAGCGTGCGGGGACATCATCTCGGGTCTACCTGTCTCCGCCCGAAGGG GGAGGGAGGTACTCTTGGGACCGGCCGACAGTTTTGAGGGGCAGGGGTGGCGACTCCTTTCGCCCATCAC GGCCTACGCCCAACAGACGCGGGGCATGCTTAGCTGTATCATCACTAGCCTCACAGGCCGGGACAAGAAC CAGGTCGAGGGGGAGGTCCAAGTGGTCTCCACCGCGACGCAATCCTTCCTGGCGACCTGCGTCAATGGCG TGTGCTGGACTGTCTTCCATGGTGCCGGCCCCAAGACCCTAGCCGGCCCAAAAGGGCCGATCACCCAAAT GTACACCAATGTAGACCAGGACCTCGTCGGTTGGCAAGCGCCCCCCGGGGCGCGTTCCTTGACACCATGC ACCTGCGGCAGCTCGGACCTTTACTTGGTCACGCGGCATGCCGATGTCATCCCGGTGCGCCGGCGGGGCG ACAGCAGAGGGAGCTTGCTCTCCCCCAGGCCCATTTCCTACTTGAAGGGCTCTTCGGGTGGTCCGCTGCT CTGCCCCTCGGGGCACGTCGTGGGCATCTTCCGGGCTGCCGTGTGCACCCGGGGGGTCGCGAAGGCGGTG GACTTCATACCCGTTGAGTCCATGGAAACTACCATGCGGTCCCCGGTCTTTACGGACAATTCGACCCCGC CGGCGGTACCGCAGTCATTCCAAGTGGCCCATCTACACGCTCCCACTGGCAGCGGCAAAAGCACCAAGGT GCCGGCTGCATATGCAGCCCAAGGGTATAAGGTGCTTGTCCTGAACCCGTCCGTTGCCGCCACTTTAGGC TTTGGAACGTACATGTCTAAGGCACATGGTGTTGACCCCAACATCAGAACCGGGGTAAGGACCATCACCA CGGGTGCCCCCATTACGTACTCTACCTACGGCAAGTTCCTTGCCGACGGTGGTTGCTCTGGGGGCGCCTA TGACATCATAATATGTGATGAGTGCCACTCAACTGACTCGACTTCCATCCTGGGCATCGGTACAGTCCTG GACCAAGCGGAGACGGCTGGAGCGCGGCTTGTCGTGCTCGCCACCGCTACACCTCCGGGATCGGTCACCG TGCCACATTCTAACATTGAGGAGGTGGCTCTGTCCACCACTGGAGAGATCCCCTTCTACGGCAAAGCCAT CCCAATTGAGACCATCAAGGGGGGGAGGCACCTCATTTTCTGCCATTCCAAAAAGAAATGTAACGAGCTC GCCGCGCAGCTGTCAAACCTCGGACTCAACGCTGTAGCGTATTATCGGGGCCTTGACGTGTCCGTCATAC CGACCAGCGGAGATGTCGTTGTCGTAGCAACGGACGCTCTAATGACGGGCTATACCGGCGACTTTGACTC AGTGATCGACTGTAATACATGCGTCATCCAGACAGTCGATTTCAGCTTGGACCCTACCTTCACCATCGAG ACGACGACCGTACCCCAAGATGCGGTGTCGCGCTCACAGCGGCGGGGCAGGACTGGTAGGGGCAGAATGG GTATCTATAGGTTTGTGGCTCCAGGAGAACGGCCCTCGGGCATGTTCGATTCCTCGGTCCTGTGTGAGTG CTATGACGCGGGTTGTGCTTGGTACGAGCTTACGCCCGCTGAGACCTCAGTTAGGTTGCGGGCTTACCTA AATACACCAGGGTTGCCCGTTTGCCAGGACCATCTGGAGTTCTGGGAGAGCGTCTTCACAGGCCTCACCC ACATAGACGCCCATTTCTTGTCCCAAACCAAACAGGCAGGAGACAACTTCCCCTACCTGGTAGCATACCA GGCCACAGTGTGCGCCAGGGCTCAGGCTCCACCTCCATCGTGGGACCAAATGTGGAAGTGTCTCATACGG CTAAAGCCTACGTTGCATGGGCCAACGCCTCTGCTGTATAGGCTGGGAGCCGTCCAAAACGAGGTCACCC TCACACACCCCATAACCAAATACATCATGGCATGCATGTCGGCCGACCTGGAGGTCGTCACCAGCACCTG GGTGTTGGTAGGCGGAGTTCTTGCAGCTCTGGCCGCGTATTGCCTGACAACAGGCAGCGTGGTCATTGTG GGCAGGATCATCTTGTCCGGGAGGCCGGCTGTCGTACCTGACAGAGAGGTCCTCTACCAGGAGTTCGATG AGATGGAAGAGTGTGCATCACACCTCCCTTACATCGAGCATGGAATGCAGCTCGCTGAGCAATTCAAGCA GAAAGCGCTCGGGTTGTTGCAAACAGCTACCAAGCAGGCGGAGGCTGCTGCTCCCGTGGTGGAGTCCAAG TGGCGAGCCCTTGAGGCCTTCTGGGCGAAGCACATGTGGAACTTCATCAGCGGGATACAATACCTGGCGG GCCTGTCCACTCTACCTGGGAATCCCGCAATAGCATCATTAATGGCATTCACAGCCTCCATCACCAGCCC GCTTACCACCCAAACCACTCTCTTGCTTAACATCTTGGGAGGATGGGTGGCCGCCCAACTCGCCCCCCCC GGTGCTGCCTCGGCTTTCGTGGGCGCCGGTATTGCCGGCGCGGCTGTTGGCAGCATAGGTCTTGGGAAGG TGCTTGTGGACATCCTGGCGGGCTATGGGGCAGGGGTGGCAGGCGCACTCGTGGCCTTTAAGGTCATGAG TGGCGAGATGCCCTCCACCGAGGACCTGGTCAACTTACTCCCTGCCATTCTCTCTCCCGGGGCCCTGGTC GTTGGGGTCGTGTGTGCAGCGATACTGCGCCGGCACGTGGGCCCGGGGGAGGGAGCTGTGCAGTGGATGA ACCGGCTGATAGCGTTCGCCTCACGGGGTAACCACGTCTCCCCCACACACTATGTGCCTGAGAGCGACGC CGCAGCGCGTGTTACTCAGATCCTCTCCAGCCTTACCATCACTCAGCTGTTGAAGAGACTCCACCAATGG ATCAATGAAGACTGCTCCACGCCATGCTCCGGCTCGTGGCTAAGGGATGTCTGGGAGTGGATATGCACGG TGTTGACTGACTTCAAGACCTGGCTCCAGTCCAAGCTCCTGCCGCGGTTGCCGGGAGTCCCTTTCCTCTC ATGCCAGCGTGGGTACAGGGGAGTCTGGCGGGGAGACGGCATCATGCATACCACCTGCCCATGTGGAGCA CAAATCACCGGACATGTCAAAAACGGTTCCATGAGGATCGTTGGGCCTAGGACCTGCAGCAACACGTGGC ACGGAACATTCCCCATCAACGCATACACCACGGGCCCTTGCACACCCTCCCCGGCGCCAAACTATTCCAG GGCGCTGTGGCGGGTAGCTGCTGAGGAGTACGTGGAGGTTACGCGGGTGGGGGATTTCCACTACGTGACG GGCATGACCACTGACAACATAAAGTGCCCGTGCCAGGTCCCGGCCCCCGAATTCTTCACAGAGGTGGATG GGGTGCGGCTGCACAGGTACGCTCCGGCGTGCAAACCTCTCCTACGGGATGAGGTCACATTCCAGGTCGG GCTCAACCAATTCGTGGTTGGGTCGCAGCTCCCATGTGAGCCCGAACCGGATGTGGCGGTGCTAACTTCC ATGCTCACCGACCCCTCCCACATTACAGCAGAGACGGCCAAGCGTAGACTGGCCAGGGGGTCTCCCCCCT CCTTGGCCAGCTCTTCCGCTAGCCAGTTGTCTGCGATTTCCTTGAAGGCGGCATGCACTACACACCACAA CTCCCCGGACGTCGACCTCGTCGAGGCCAACCTCCTGTGGAGGCAGGAGATGGGCGGGACCATCACCCGC GTGGAGTCAGAGAACAAGGTGGTGATTCTGGACTCCTTCGAGCCGCTTCGAGCGGAGGAGGATGAGAGGG AAGTGTCCGTTGCGGCGGAGATCCTGCGGAAATCCAAAAGGTTCCCCCCAGCGCTGCCCATATGGGCACG CCCGGATTACAACCCTCCGCTGTTGGAGTCCTGGAAGAACCCAGACTATGTCCCTCCGGTGGTACATGGG TGCGCGCTACCACCTACCAAAGCCCCTCCAGTACCGCCTCCACGGAGGAAGAGGACAGTTGTCCTAACTG AGTCTACTGTGTCTTCTGCCCTGGCGGAGCTTGCCGCGAAGACTTTCGGCGGCTCCGAATCGTCAGCCGC CGATAGCGGCACGGCGACTGCCCCTCCAGACCAGCCCTCCGACAACGGCGACACAGGATCCGACGTTGAG TCGTACTCCTCCATGCCCCCCCTCGAGGGGGAGCCGGGGGATCCCGATCTCAGCGACGGGTCTTGGTCTA CCGTGAGCGAGGAGGCTGGTGATAATGTAGTCTGCTGCTCGATGTCCTACACATGGACAGGCGCTCTGAT CACGCCATGCGCCGCGGAGGAAAGCAAGCTGCCCATCAATGCGCTGAGCAACTCTTTGCTGCGTCACCAT AACATGGTTTATGCTACAACATCCCGCAGCGCAAGCCAGCGGCAGAAGAAGGTCACCTTTGACAGACTGC AAGTCCTGGATGATCACTACCGGGACGTGCTCAAGGAGATGAAGGCGAAGGCGTCCACAGTTAAGGCCAA ACTTCTATCTGTGGAGGAGGCCTGCAAGCTGACGCCCCCACATTCGGCCAGATCAAAATTTGGCTATGGG GCAAAGGACGTCCGGAACCTATCCAGCAAGGCCATTAAACACATCCGCTCCGTGTGGGAGGACTTGCTGG AAGACACTCAAACACCAATTGACACCACCATCATGGCAAAAAACGAGGTTTTCTGCGTCCAACCAGAAAA GGGAGGCCGCAAGCCAGCTCGCCTTATCGTGTTCCCAGACTTGGGAGTGCGTGTGTGCGAAAAGATGGCC CTTTACGACGTGGTCTCCACCCTTCCTCAGGCCGTGATGGGCTCCTCTTACGGGTTCCAATACTCTCCTG GACAGCGGGTCGAGTTCCTGGTGAATGCCTGGAAATCAAAGAAATGCCCTATGGGCTTCTCATATGACAC CCGCTGTTTTGACTCAACAGTCACCGAGAACGATATCCGTGTTGAGGAGTCAATTTACCAATGTTGTGAC TTGGCCCCCGAAGCCAGGCAGGCTATAAGGTCGCTCACAGAGCGGCTTTATATCGGGGGTCCCCTGACCA ATTCAAAAGGGCAGAACTGCGGTTATCGCCGGTGCCGCGCAAGCGGTGTACTGACGACCAGCTGCGGTAA TACCCTCACATGTTACTTGAAGGCCACTGCAGCCTGTCGAGCTGCGAAGCTCCAGGACTGCACAATGCTC GTGTGCGGAGACGACCTTGTCGTTATCTGTGAAAGCGCTGGAACCCAGGAGGACGAGGCGAACCTACGAG CCTTTGCACTGGCTATGACTAGGTACTCTGCCCCCCCCGGGGACCCGCCCCAACCAGAATACGACTTGGA GCTGATAACATCATGCTCTTCTAATGTGTCGGTCGCGCACGATGCATCTGGCAAAAGAGTGTACTACCTC ACCCGTGATCCCACCACCCCTCTCGCGAGGGCTGCGTGGGAGACAGCTAGACACACTCCAGTTAACTCCT GGCTAGGCAACATCATCATGTTTGCACCCACCTTATGGGCAAGGATGATTTTGATGACTCACTTCTTCTC CATCCTTCTGGCCCAGGAGCAACTTGAGAAAGCCCTAGATTGCCAGATCTACGGGGCTTGTTACTCCATT GAGCCACTTGACCTACCTCAGATCATTCAACGACTCCATGGCCTTAGCGCATTTTCACTCCACAGTTACT CTCCAGGTGAGATCAATAGGGTGGCTGCATGCCTCAGGAAACTTGGGGTACCACCCTTGCGAGCCTGGAG ACATCGGGCCAGAAGTGTCCGCGCTAAGCTACTGTCTCGGGGGGGGAGGGCCGCCACTTGTGGCAAGTAC CTCTTCAACTGGGCAGTAAGGACCAAGCTCAAACTCACTCCAATTCCGGCCGCATCCCAGCTGGACTTGT CCGGCTGGTTCGTTGCTGGCTACAGCGGGGGAGACATATATCACAGCTTGTCTCGTGCCCGACCCCGCTG GTTCATGTGGTGCCTACTCCTACTTTCCGTAGGGGTAGGCATCTACCTGCTCCCCAACCGATGAACGGGG AGCTAAACACTCCAGGCCAATAGGCCGTTTCCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT TTTTTTCCTTTTTTTTTTTTATTTTCTATCCTTCTTTTGGTGGCTCCATCTTAGCCCTAGTCACGGCTAG CTGTGAAAGGTCCGTGAGCCGCATGACTGCAGAGAGTGCTGATACTGGCCTCTCTGCAGATCATGT
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