Virus General Information

  Virus Name
Simian immunodeficiency virus (SIV)
  Strains
(strain 17E-Fr)
  Lineage
Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Retroviridae; Orthoretrovirinae; Lentivirus
  Virus Molecule Type
ssRNA-RT
  Sequence ID
NC_001549.1
  Genome Type
Non-segmented
  Related Host Hordeum vulgare Triticum aestivum
  External Link
 Taxon ID 160753
 Virus-Host DB https://www.genome.jp/virushostdb/view/?mode=view&search_text=Simian+immunodeficiency+virus
 KEGG BRITE ID NC_001549
 ICTV ID 202205034

Virus Virion and Genome Information

    Virion Information
Non-enveloped, rigid rod-shaped, 20-25 nm in diameter and of three lengths: 150-160 nm (B), 126 nm (M) and 109 nm (T) depending on which RNA is encapsidated. The nucleocapsid is longitudinally striated.
    GENOME Information
Segmented, tri- (or possibly quadri-) partite linear ssRNA(+) genome composed of RNA-alpha=3.8 kb, RNA-beta=3.3 kb and RNA-gamma=2.9-3.3. The 3' terminus of each RNA contains a tRNA-like structure. The 5' terminus is capped (m7G5pppGUA). There are a total of 7 open reading frames.

Virus-RNA -- Host-ncRNA Interaction

RNA Binding Site RNA Detail HncRNA Name Host Species External Link HncRNA Detail
nef RNA Info hsa-miR-146a-5p Homo sapiens miRBase HncRNA Info
nef RNA Info hsa-miR-29a-3p Homo sapiens miRBase HncRNA Info
nef RNA Info hsa-miR-29a-5p Homo sapiens miRBase HncRNA Info
nef RNA Info hsa-miR-29b-3p Homo sapiens miRBase HncRNA Info
nef RNA Info hsa-miR-9-5p Homo sapiens miRBase HncRNA Info

Virus Sequence Information

>NC_001549.1 Simian immunodeficiency virus, complete genome TGGATGGGATATATTACTCTGAAAGAAGAGAAAAGATCCTGAATTTGTATGCCTTGAACGAGTGGGGAAT AATAGATGATTGGCAAGCTTACTCACCAGGCCCGGGGATAAGGTACCCGAGAGTCTTTGGCTTCTGCTTT AAGCTAGTCCCAGTGGACCTGCATGAGGAGGCACGCAACTGTGAGAGACACTGTCTGATGCATCCAGCAC AGATGGGGGAAGATCCTGATGGAATAGATCATGGAGAAGTCTTGGTCTGGAAGTTTGACCCGAAGTTGGC GGTGGAGTACCGCCCGGACATGTTTAAGGACATGCACGAACATGCAAAGCGCTAGTGTCAGCACTTTGCG GTTGGGACTTTCCGCCAGGGACTTTCCACAGTGGGTGGATCGGAGGCGGTACAGGGGCGGTACTGGGAGT GGCTTTCCCCTCAGAGCTGCATAAAAGCAGATGCTCGCTGGCTTGTAACTCAGTCTCTTACTAGGAGACC AGCTAGAGCCTGGGTGTTCGCTGGTTAGCCTAACCCGGTTGGCCACCGGGGGTAAGGACTCCTTGGCTTC ATATAGCTCAATAAACCTGCTCGCTTAGTCGCTATATTGGAGTCAAGTGCTCATTGCTGCGCCGAGCCTC TAGAGGTGAACCTCTCTTACTGGGTTCTCCTGTACCCAGGTGGGAGAAACTCCAGCAGTGGCGCCCGAAC AGGGACTTGAGAAGAGGCATCGGCACCGACCGCTGAGTTGCTGAGCGTCGGAGAGGGACGACTCAGGTAG GGTGAGAGCCTACGAGTTTTTTGCTACCTAGTCAGCGAGAAAGGCTAGGCCGCGACAGGGGCGCGGGTCC CATTAGTGGCAACCAACCCAGTTGGACGAAGGGTTGGTAGGGGACGGGTCGGAGCAATGGGCGGGGGTCA CTCAGCACTGTCAGGGAGAAGCCTCGACACGTTCGAGAAGATTAGGCTACGTCCGAACGGGAAAAAGAAG TACCAAATTAAACATTTAATATGGGCAGGAAAAGAAATGGAACGATTTGGGTTACATGAGAAACTTTTAG AAACAAAAGAAGGCTGTCAAAAAATCATAGAAGTTTTAACCCCGTTGGAACCGACAGGCTCCGAGGGGCT AAAAGCTCTGTTTAATTTGTGCTGCGTCATTTGGTGCATTCACGCAGAACAGAAAGTGAAAGACACAGAG GAAGCTGTAGTAACAGTTAAGCAACACTACCATCTAGTGGACAAAAATGAGAAAGCAGCTAAAAAGAAAA ATGAGACAACAGCGCCACCTGGTGGCGAATCAAGAAATTACCCAGTAGTAAATCAGAATAATGCCTGGGT ACACCAGCCTTTGTCTCCGCGCACGTTAAATGCGTGGGTCAAATGCGTGGAGGAAAAAAGGTGGGGAGCA GAAGTAGTCCCCATGTTCCAAGCACTCTCAGAGGGATGTCTCTCCTATGATGTAAATCAGATGCTCAATG TAATAGGAGACCATCAGGGGGCATTACAAATTCTTAAGGAAGTCATTAATGAAGAAGCAGCAGAGTGGGA CAGGACACACAGACCACCAGCTGGCCCGTTACCAGCAGGGCAGCTAAGAGACCCGACAGGGTCAGATATA GCAGGAACTACCAGCTCAATTCAGGAACAAATAGAGTGGACCTTCAATGCCAATCCAAGAATAGACGTAG GGGCACAATACAGAAAATGGGTTATTTTGGGCTTACAAAAGGTAGTGCAGATGTACAATCCCCAAAAGGT CCTAGACATTCGACAGGGACCTAAAGAACCCTTCCAGGACTATGTAGACAGATTCTATAAAGCCCTGAGA GCAGAACAAGCACCACAGGATGTTAAAAATTGGATGACACAAACTTTGCTTATCCAGAATGCCAATCCGG ATTGTAAATTGATTCTGAAAGGATTGGGAATGAATCCAACCTTGGAGGAAATGCTAATAGCTTGCCAGGG AGTAGGAGGGCCACAACATAAGGCTAAGCTAATGGTAGAAATGATGAGTAATGGACAGAATATGGTCCAA GTGGGACCTCAGAAAAAGGGCCCCCGAGGGCCGCTAAAATGCTTTAATTGTGGCAAATTTGGACATATGC AAAGGGAATGCAAGGCACCAAGACAGATCAAATGCTTTAAGTGCGGCAAAATTGGCCATATGGCAAAAGA CTGCAAGAATGGACAGGCAAATTTTTTAGGGTATGGCCATTGGGGAGGAGCGAAACCAAGAAATTTTGTG CAATACAGAGGAGACACAGTTGGTCTGGAACCAACAGCCCCCCCAATGGAAACAGCTTACGATCCAGCAA AGAAGCTCCTCCAGCAGTATGCAGAGAAGGGACAGCGCCTGAGAGAGGAGAGAGAACAGACAAGGAAACA GAAGGAGAAAGAAGTGGAGGATGTTTCCTTGAGCTCCCTCTTTGGAGGAGACCAATGAAACGAGTCATCA TAGAAGGAACGCCAGTGCAAGCCTTGTTAGATACAGGAGCAGATGACACTATAATTCAAGAAAAGGACTT GCACTTTCCCCCACATAAACCATGGCGTTCCAAGGTAGTAGGAGGTATAGGAGGAGGGATTCATGTCAAA GAATATCAGGGGGTACAAGTACAATTGGAGGATAAAATCATCACCGGCTCAATTCTAATAGGAAGTACAC CAATCAATATTATAGGAAGAAATATTTTAGCTCAGGCAGGCATGAAATTAGTTATGGGAGTTCTATCTAG TCAGATTGAGGAAACAAAAGTACAACTAAAAGAAGGGAAAGATGGACCTAAATTGAAACAATGGCCCTTA TCAAGAGAAAAAATTGAAGCTTTAACAGAAATATGCAAACAAATGGAAGAGGAGGGAAAATTATCTAGGA TAGGAGGAGAAAATCCTTATAATACACCAGTGTTTGCCATAAAGAAAAAGGATAAAACACAATGGAGAAT GCTTGTAGATTTCAGGGAACTAAACAAAGCTACTCAAGACTTTTTTGAGGTTCAGCTGGGAATTCCTCAC CCAGCGGGCCTTCAGAAAAAGAAGCAAATCACAGTAATAGACATAGGGGATGCCTATTATTCAATACCAT TATGCAAGGAATTCAGAAAATATACAGCATTTACCATCCCCTCAGTAAATAATACAGGGCCAGGGATAAG GTATCAGTTCAATTGTCTGCCTCAGGGATGGAAAGGATCTCCTACAATTTTCCAGAATACGGCAGCAAAC ATTTTAGAGGAGATCAAAAGGCACACTCCTGGGTTAGAAATTGTCCAATACATGGACGATTTGTGGTTGG CGTCAGACCATGATGAGACTAGACATAATCAACAGGTAGACATAGTAAGAAAGATGCTGCTAGAAAAAGG TCTAGAAACCCCAGACAAGAAAGTCCAAAGAGAACCGCCATGGGAATGGATGGGGTATAAATTGCATCCG AATAAATGGACCATTAACAAAATAGAATTACCCCCCTTAGAAGGAGAATGGACAGTAAACAAAATACAGA AGGTAGTAGGAGTTCTAAATTGGGCAAGTCAAATTTATCCAGGAATTAAAACCAAACATACCTGTGCCAT GTTGAGAGGGAAAAAGAACCTCCTAGAAGAAATAGTATGGACAGAAGAGGCAGAGGCAGAATATAAGAAC AATCAAGGGATAGTGCAGGAAACACAAGAAGGAACATACTATGACCCTCTCAAAGAATTAATAGCAACAG TTCAAAAGCAAGGAGAAGGGCAATGGACATACCAATTCACCCAAGAAGGGGCAGTATTAAAGGTGGGAAG ATATGCCAAGCAAAGAGAAACTCATACTAATGATCTAAGGACTCTAGCACACCTTGTCCAAAAAATCTGT AAGGAAGCACTTACCATTTGGGGAAGACTTCCACGAGTACAACTCCCAGTAGACAAGAAAACATGGGATA TGTGGTGGCAGGACTATTGGCAAGTATCCTGGATACCAGAATGGGAGTTTGTTAGCACACCACTCCTAGT AAAACTGTGGTATTCCTTAGTAAAAGAACCAATCAAAGGAGAAGATGTTTATTATGTGGATGGGGCAGCA TCCAAAGTGACCAAATTAGGTAAGGCAGGATATCTGTCAGAGAGAGGAAAAAGTAGAATTAGGGAATTAG AAAACACCACTAACCAACAAGCAGAATTAACAGCAGTTAAGATGGCATTGGAGGACAGTGGAGAAAATGT AAATATAGTCACAGATTCTCAATATGTAATGAACATCTTGACAGCATGTCCACAGGAAAGTAACTCACCC TTAGTGGAACAGATAATACAAGCCCTAATGAAAAAGAGGCAGGTCTACTTACAATGGGTACCAGCTCATA AGGGGATAGGAGGCAATACAGAAATAGATAAATTAGTAAGCAAAGGAATAAGACAGATCCTCTTCTTAGA TAGAATAGAAGAAGCACAAGATGACCATGCAAAGTACCATAACAATTGGAGAAGTATGGTACAGGAATTT GGATTACCTAATATAGTAGCAAAAGAGATAGTAGCGGCATGTCCCAAATGCCAAATAAGAGGAGAACCTA AGCATGGACAGGTAGACGCCTCCATTGAAACTTGGCAGATGGACTGCACCCATTTAGAAGGAAAAGTTAT AATAGTAGCAGTACATGTAGCCAGTGGATTCATAGAAGCAGAGGTGATCCCAAGAGAAACTGGGAAGGAG ACAGCACACTTTCTGCTGAAACTGTTAGCAAGATGGCCAGTGAAACATCTACACACTGATAATGGCCCAA ACTTTACCTCTCAGAATGTGGCAGCGGTGTGCTGGTGGGGTAATATAGAGCACACCACTGGAATACCTTA TAACCCACAGTCACAGGGTAGTGTAGAAAGCATGAACAGACAGCTCAAGGAAATCATCTCTCAAATAAGA GATGATTGTGAGAGATTGGAGACAGCAGTGCAAATGGCTACGCATATCCACAATTTTAAAAGAAAGGGAG GAATAGGGGGTATCTCTAGTGCAGAAAGATTGGTTAATATGCTAACAACACAACTAGAACTAAATACTCT ACAAAACCAAATCCAAAAAATTTTGAATTTTAAGGTCTACTACAGAGAAGGTAGAGATCCAGTGTGGAAA GGACCAGCGCGACTCATCTGGAAAGGAGAAGGCGCGGTGGTAATTAAAGAGGGGGAAGACATCAAGGTAG TCCCCAGGAGAAAGGCTAAGATTATCAAAGATTATGGAGAGAGAAAAACAATGGATAGTGAGGGTAGTAT GGAGGGTGTCAGAGAGGCAAATAAGCAGATGGAGGGGGATAGTGACTTACAAGATCAGGAATAAACAATT GCCTTGGGAATACAGACATCATTGGCAGGTGCAATGGCAGTTTTGGACCTACAGCCAGTTCATTATCCCC TTATCAAAAGATGATTACATAGAAGTGAATATTTATCACAACCTCACCCCAGAAAGAGGATGGCTCTCAA GTCATGGAGTAGGGTTATCCTATTACCATCAAAAGGGATATAAGACAGAAGTAGATCCAGGAACAGCAGA CAGAATGATACACCTATATTATTTTAACTGTTTTACAGATAGAGCCATCCAACAGGCTATCAGAGGGGAG AAGTATACGTGGTGCACATTCAAGGAAGGACATAAAGGTCAGGTACAATCACTGCAACTTTTGGCACTAG TTGCATATACAAATGGCATCAGGAAGAGATCCAAGAGAACCTTTACCAGGATGGCTGGAAATCTGGGATC TAGACAGGGAGCCATGGGACGAATGGCTACAAGACATGCTCAGGGATCTAAACGAAGAAGCCAGAAGGCA CTTTGGAATGAACATGCTAATCCGAGTATGGAATTACTGTGTAGAGGAGGGAAGGAGACATAATACCCCA TGGAATGAGATAGGCTACAAGTACTATAGAATTGTTCAAAAGTCTATGTTTGTACATTTCAGATGTGGTT GTAGAAGGAGAGGACCTTTTTCCCCTTACGAAGAGAGGAGAAATGGACAAGGAGGAGGAGCCCCACCCCC TCCTCCAGGACTTGCATAGGCCATTACAACCATGTACTAATAAATGCTATTGCAAAAAATGCTGTTATCA CTGTGAGCTTTGCTTCCTGCAGAAGGGCTTAGGAGTGCGTTATCATGTCTCTAGGAAAAGAAGAAAAACA AGCACTCAAGATAATCAAGACCCTATACGGCAGCAGTAAGTATGGGGAGATTGCTTATAAAAATACTAAT AATAGCAATAGGGATAAGTATAGGAATAGGTAACCTGTATGTGACAGTGTTTTATGGAATCCCAGTATGG AAAAATTCAACAGTTCAGGCATTTTGCATGACGCCCAATACCAATATGTGGGCAACCACCAACTGCATAC CAGATGATCATGATAATACAGAGGTGCCTCTAAACATTACAGAAGCTTTCGAGGCTTGGGATAATCCGCT GGTAAAACAAGCAGAGAGTAATATACATCTACTCTTTGAACAAACGATGAGGCCTTGTGTTAAGCTCTCC CCCATATGTATTAAAATGTCCTGTGTAGAGCTGAATGGTACAGCCACGACAAAGGCCACCACTACTGCAA CTACAACAATGACTACCCCCTGTCAGAATTGCAGTACAGAGCAGATAGAAGGAGAAATGGCAGAGGAACC AGCATCCAACTGCACTTTTGCAATTGCAGGATATCAAAGAGATGTAAAAAAGAATTATAGCATGACCTGG TATGATCAGGAGTTAGTCTGCAATAATAAAACAGGAAGTGAAAAGGGAAGTAAGGATTGTTACATGATAC ATTGTAATGATTCAGTGATAAAAGAAGCTTGTGATAAAACATATTGGGATACTTTAAGAGTAAGATACTG TGCACCAGCAGGGTATGCTTTGCTAAAATGTAATGATAAGGATTATAGAGGCTTTGCTCCAAAGTGCAAG AATGTTTCAGTAGTGCATTGTACTAGATTAATCAATACTACTATAACTACAGGGATAGGATTAAATGGTA GTAGATCAGAAAATAGAACAGAGATATGGCAGAAAGGAGGAAATGATAATGATACAGTTATAATAAAGTT GAATAAGTTTTACAACTTGACAGTGAGATGCCGAAGACCTGGTAATAAAACAGTGTTGCCAGTAACAATC ATGGCAGGGTTAGTATTTCACTCTCAGAAATATAATACCAGGTTAAAACAAGCGTGGTGCCACTTCCAAG GAGATTGGAAAGGGGCATGGAAAGAAGTCAGAGAAGAAGTAAAGAAAGTGAAAAATCTTACAGAAGTAAG CATAGAAAATATACATCTGAGAAGGATATGGGGAGATCCAGAATCAGCGAATTTTTGGTTCAATTGTCAA GGTGAATTTTTCTATTGTAAGATGGACTGGTTTATCAATTATCTAAACAATCGAACAGAAGATGCAGAAG GTACTAATAGGACCTGTGACAAAGGGAAGCCAGGACCAGGACCATGTGTTCAGAGAACTTATGTTGCCTG CCATATACGACAAGTAGTAAATGATTGGTACACTGTCTCTAAAAAGGTATATGCTCCACCAAGGGAAGGT CATTTGGAGTGTAACTCATCAGTCACGGCACTATACGTGGCAATAGATTATAACAACAAGTCTGGCCCAA TAAATGTGACCCTAAGTCCTCAGGTACGCAGCATATGGGCGTACGAACTGGGAGACTATAAATTAGTAGA GATAACACCAATTGGCTTTGCTCCTACAGATGTAAGAAGATATACTGGCCCCACAAGAGAAAAAAGGGTG CCATTCGTGCTAGGGTTTCTAGGCTTCTTGGGAGCTGCTGGAACTGCAATGGGCGCAGCGGCAACAACGC TGACAGTCCAGTCTCGGCATTTGCTTGCTGGGATATTGCAGCAGCAGAAGAACTTGCTGGCGGCTGTGGA ACAGCAACAACAGTTGTTGAAGCTGACCATTTGGGGTGTGAAAAACCTCAATGCCCGCGTCACAGCTCTC GAGAAGTACCTAGAGGATCAGGCACGGCTAAATTCATGGGGATGTGCGTGGAAACAAGTATGTCACACCA CAGTGCCATGGAAGTATAATAACACTCCTAAGTGGGACAATATGACTTGGTTGGAGTGGGAGAGACAAAT TAATGCCTTGGAAGGCAACATAACTCAACTATTGGAAGAAGCACAAAATCAGGAATCAAAGAATCTGGAT CTGTACCAGAAATTGGATGATTGGTCAGGGTTCTGGTCATGGTTCTCACTGTCAACTTGGTTAGGCTATG TTAAAATAGGATTTTTAGTGATAGTGATTATTCTAGGATTAAGATTTGCATGGGTATTATGGGGATGTAT CAGAAATATTAGGCAGGGATATAATCCTCTCCCCCAGATCCATATCCACAGTTCAGCGGAACGGCCAGAC AACGGAGGAGGGCAAGACAGAGGTGGAGAAAGCAGCAGCAGCAAATTGATAAGATTGCAGGAAGAGTCCT CAACACCTTCGAGGATCAACAACTGGTGGCTCAACTTCAAGAGCTGCAGCTTGAGAATAAGGACTTGGTG TTACAACATCTGCCTGACCCTCCTCATATTCATCAGGACAGCAGTGGGATACCTGCAGTATGGGCTCCAG CAACTCCAAGAGGCAGCAACAGGGCTTGCTCAAGCTCTGGCGAGGGCTGCGAGGGAAGCCTGGGGCAGAC TGGGTGCTATTGTCCGATCCGCTTATCGGGCAGTCATCAACAGTCCAAGAAGAGTGCGGCAAGGCCTTGA AAAAGTCCTGGGGTAAAGGTAAAATGACTCCAGACGGCCGCCGCCTGCAAGAAGGAGACACCTTTGATGA GTGGGATGATGATGAAGAAGAAGTAGGCTTCCCTGTGCAACCTCGAGTCCCCTTAAGACAGATGACCTAT AAATTAGCAGTGGACTTTTCCCACTTTTTAAAATCAAAGGGGGGACTGGATGGGATATATTACTCTGAAA GAAGAGAAAAGATCCTGAATTTGTATGCCTTGAACGAGTGGGGAATAATAGATGATTGGCAAGCTTACTC ACCAGGCCCGGGGATAAGGTACCCGAGAGTCTTTGGCTTCTGCTTTAAGCTAGTCCCAGTGGACCTGCAT GAGGAGGCACGCAACTGTGAGAGACACTGTCTGATGCATCCAGCACAGATGGGGGAAGATCCTGATGGAA TAGATCATGGAGAAGTCTTGGTCTGGAAGTTTGACCCGAAGTTGGCGGTGGAGTACCGCCCGGACATGTT TAAGGACATGCACGAACATGCAAAGCGCTAGTGTCAGCACTTTGCGGTTGGGACTTTCCGCCAGGGACTT TCCACAGTGGGTGGATCGGAGGCGGTACAGGGGCGGTACTGGGAGTGGCTTTCCCCTCAGAGCTGCATAA AAGCAGATGCTCGCTGGCTTGTAACTCAGTCTCTTACTAGGAGACCAGCTAGAGCCTGGGTGTTCGCTGG TTAGCCTAACCCGGTTGGCCACCGGGGGTAAGGACTCCTTGGCTTCATATAGCTCAATAAACCTGCTCGC TTAGTCGCTATATTGGAGTCAAGTGCTCATTGCTGCGCCGAGCCTCTAGAGGTGAACCTCTCTTACTGGG TTCTCCTGTACCCAGGTGGGAGAAACTCCAGCA
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