Virus General Information

  Virus Name
Rhinovirus (RV)
  Lineage
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Aphthovirus; unclassified Aphthovirus
  Virus Molecule Type
ssRNA(+)
  Sequence ID
NC_038311.1
  Genome Type
Non-segmented
  Related Host Bos taurus
  Related Disease Common cold
  External Link
 Taxon ID 12059
 Virus-Host DB https://www.genome.jp/virushostdb/view/?mode=view&search_text=Rhinovirus
 KEGG BRITE ID NC_034245

Virus Virion and Genome Information

    Virion Information
Non-enveloped, spherical, about 30 nm in diameter, T=pseudo3 icosahedral capsid surrounding the naked RNA genome. The capsid consists of a densely-packed icosahedral arrangement of 60 protomers, each consisting of 4 polypeptides, VP1, VP2, VP3 and VP4. VP4 is located on the internal side of the capsid.
    GENOME Information
Monopartite, linear ssRNA(+) genome of 7.1-8.9 kb, polyadenylated, composed of a single ORF encoding a polyprotein. Viral genomic RNA has a viral protein (VPg) at its 5' end instead of a methylated nucleotide cap structure. The long UTR at the 5' end contains an internal ribosome entry site (IRES). The P1 region encodes the structural polypeptides. The P2 and P3 regions encode the nonstructural proteins associated with replication. The shorter 3' UTR is important in (-)strand synthesis. L is an additional N-terminal leader protein present in some genera that can either be a papain-like cysteine proteinases (genera aphthovirus, erbovirus) or have another function (genera kobuvirus, cardiovirus, teschovirus, sapelovirus, senecavirus).

Virus-RNA -- Host-Protein Interaction

RNA Binding Site RNA Detail Protein Name Host Species Uniprot ID Protein Detail
5'UTR - 3'UTR RNA Info 100 kDa coactivator Homo sapiens Q7KZF4 Pro Info
5'UTR - 3'UTR RNA Info 140 kDa Ser/Arg-rich domain protein Homo sapiens O15042 Pro Info
5'UTR - 3'UTR RNA Info 3-keto acyl-CoA synthase ELOVL1 Homo sapiens Q9BW60 Pro Info
5'UTR - 3'UTR RNA Info 4-hydroxyphenylpyruvate dioxygenase Homo sapiens P32754 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S10 Homo sapiens P46783 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S13 Homo sapiens P62277 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S18 Homo sapiens P62269 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S2 Homo sapiens P15880 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S23 Homo sapiens P62266 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S3 Homo sapiens P23396 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S3a Homo sapiens P61247 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S4 Homo sapiens P62701 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S6 Homo sapiens P62753 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S7 Homo sapiens P62081 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S8 Homo sapiens P62241 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S9 Homo sapiens P46781 Pro Info
5'UTR - 3'UTR RNA Info 5'-3' exoribonuclease 2 Homo sapiens Q9H0D6 Pro Info
5'UTR - 3'UTR RNA Info 60S ribosomal protein L10 Homo sapiens P27635 Pro Info
5'UTR - 3'UTR RNA Info 60S ribosomal protein L13 Homo sapiens P26373 Pro Info
5'UTR - 3'UTR RNA Info 60S ribosomal protein L18 Homo sapiens Q07020 Pro Info

Virus Sequence Information

>NC_038311.1 Human rhinovirus 1 strain ATCC VR-1559, complete genome TTAAAACTGGGTGTGGGTTGTTCCCACCCACACCACCCAATGGGTGTTGTACTCTGTTATTCCGGTAACT TTGTACGCCAGTTTTTCCCTCCCCTCCCCATCCTTTTACGTAACTTAGAAGTTTTAAATACAAGACCAAT AGTAGGCAACTCTCCAGGTTGTCTAAGGTCAAGCACTTCTGTTTCCCCGGTTGATGTTGATATGCTCCAA CAGGGCAAAAACAACAGATACCGTTATCCGCAAAGTGCCTACACAGAGCTTAGTAGGATTCTGAAAGATC TTTGGTTGGTCGTTCAGCTGCATACCCAGCAGTAGACCTTGCAGATGAGGCTGGACATTCCCCACTGGTA ACAGTGGTCCAGCCTGCGTGGCTGCCTGCGCACCTCTCATGAGGTGTGAAGCCAAAGATCGGACAGGGTG TGAAGAGCCGCGTGTGCTCACTTTGAGTCCTCCGGCCCCTGAATGCGGCTAACCTTAAACCTGCAGCCAT GGCTCATAAGCCAATGAGTTTATGGTCGTAACGAGTAATTGCGGGATGGGACCGACTACTTTGGGTGTCC GTGTTTCACTTTTTCCTTTATTAATTGCTTATGGTGACAATATATATATTGATATATATTGGCATCATGG GCGCCCAGGTATCTAGACAAAATGTTGGTACACACTCAACCCAAAATTCAGTGTCAAATGGATCAAGTTT AAATTACTTTAATATAAATTACTTCAAGGATGCTGCCTCAAGTGGTGCATCTAGATTAGATTTCTCTCAA GATCCAAGCAAATTCACTGACCCAGTTAAAGATGTCTTAGAAAAGGGGATCCCAACACTACAATCACCAT CTGTTGAGGCTTGTGGCTATTCAGACAGGATTATGCAAATAACCAGAGGAGATTCAACAATCACATCTCA AGATGTAGCAAATGCTGTGGTTGGGTATGGGGTCTGGCCGCATTACTTAACACCACAAGATGCCACTGCT ATAGACAAACCAACACAACCTGATACATCATCAAATAGATTTTATACACTAGAGAGTAAACATTGGAATG GTAGTTCAAAAGGATGGTGGTGGAAATTACCAGATGCTCTTAAAGACATGGGTATTTTTGGAGAAAATAT GTATTATCATTTCCTGGGTAGAAGTGGATATACAGTTCATGTGCAGTGTAATGCTAGTAAATTCCATCAG GGTACCTTGTTAGTTGCAATGATACCAGAACACCAGCTAGCAAGTGCAAAACACGGAAGTGTGACTGCTG GTTACAAACTCACACACCCAGGTGAGGCTGGCAGAGATGTAAGTCAAGAACGTGATGCAAGTTTAAGACA ACCTAGTGATGATAGTTGGCTTAATTTTGATGGCACCCTTCTTGGAAATTTATTAATTTTCCCACATCAA TTTATAAACCTTAGGAGTAATAATTCTGCAACTCTAATAGTACCATATGTAAATGCTGTGCCAATGGATT CAATGCTTCGACATAATAACTGGAGCCTGGTCATCATACCAATTAGTCCATTACGTAGTGAAACTACATC TTCTAATATAGTGCCAATCACTGTATCAATAAGTCCCATGTGTGCTGAATTTTCTGGTGCAAGAGCAAAA AACATTAAACAAGGATTACCTGTATATATAACTCCAGGATCTGGGCAATTCATGACTACTGATGATATGC AATCACCTTGTGCACTACCCTGGTACCATCCTACTAAAGAAATATCTATTCCGGGTGAAGTTAAAAACCT TATAGAAATGTGTCAAGTTGATACCTTGATTCCAGTCAATAATGTGGGTAACAATGTTGGAAATGTCAGT ATGTACACTGTACAACTAGGGAACCAAACAGGCATGGCACAAAAAGTCTTTTCAATAAAAGTAGACATTA CATCACAGCCTTTGGCTACAACTTTAATTGGGGAGATTGCAAGCTATTACACCCATTGGACTGGCAGTCT GCGATTTAGTTTTATGTTTTGTGGGACTGCAAACACAACACTTAAATTATTACTTGCATACACACCACCT GGTATTGATGAACCAACAACTAGAAAGGATGCAATGCTAGGGACACATGTTGTGTGGGATGTTGGATTGC AGTCTACTATATCTCTTGTTGTACCATGGGTGAGTGCCAGCCACTTCAGGTTAACTGCAGATAATAAATA CTCCATGGCTGGTTATATCACATGTTGGTACCAAACTAATTTAGTAGTGCCCCCAAGTACGCCACAGACT GCTGATATGCTGTGTTTTGTTTCTGCATGTAAAGATTTTTGTCTACGAATGGCAAGGGATACAGATTTAC ACATACAAAGTGGTCCAATAGAGCAAAATCCAGTAGAAAACTACATTGATGAAGTTTTAAATGAAGTTTT AGTAGTGCCGAATATAAAAGAAAGTCATCACACTACATCAAACTCTGCCCCACTTTTAGATGCTGCAGAG ACGGGACACACCAGTAATGTTCAACCAGAAGATGCTATAGAGACAAGGTATGTTATAACATCACAAACAA GAGATGAGATGAGTATAGAAAGTTTCCTTGGTAGATCTGGTTGTGTCCACATCTCAAGAATAAAGGTTGA TTACACTGACTATAATGGACAGGACATAAATTTCACAAAATGGAAAATCACACTACAGGAAATGGCACAG ATTAGGAGAAAATTTGAATTGTTTACATATGTCAGGTTTGACTCAGAAATAACCTTGGTGCCTTGTATTG CTGGTAGAGGAGACGACATTGGACATATTGTAATGCAATATATGTATGTTCCTCCAGGAGCTCCAATTCC TTCAAAAAGAAACGATTTCTCATGGCAATCAGGCACCAATATGTCAATATTCTGGCAACATGGACAGCCA TTTCCTAGATTTTCTTTACCATTTCTTAGCATTGCATCAGCTTATTATATGTTTTATGATGGATATGATG GAGACAACACTTCTTCCAAGTATGGTAGCGTAGTTACTAATGATATGGGTACTATATGCTCAAGAATAGT TACAGAAAAACAGAAACATTCTGTTGTCATCACAACACACATATATCATAAAGCTAAACACACAAAAGCT TGGTGTCCTAGGCCCCCTAGAGCTGTCCCTTACACACATAGTCATGTGACTAATTATATGCCAGAAACAG GTGACGTGACAACAGCCATAGTCCGCAGAAACACTATAACAACTGCTGGGCCCAGTGATCTATATGTGCA TGTAGGTAACTTAATATATAGAAACTTACATCTGTTCAATTCTGAAATGCATGATTCAATTTTGATTTCA TACTCTTCTGATTTAATCATATACCGCACAAACACTATAGGTGATGATTATATTCCCAATTGTAACTGCA CTGAGGCTACTTATTATTGTAGACACAAAAATAGGTATTACCCAATAAAAGTTACTCCACATGATTGGTA TGAAATACAAGAGAGTGAATATTACCCCAAACACATCCAATACAACCTATTAATTGGTGAAGGACCATGT GAACCTGGTGATTGTGGTGGAAAACTTCTTTGTAGACATGGTGTCATTGGCATAATCACAGCAGGTGGTG AAGGTCATGTAGCATTTATAGATCTTAGACAATTTCACTGTGCTGAGGAACAAGGCATAACTGATTACAT ACACATGTTGGGAGAGGCTTTTGGCAATGGTTTTGTAGATAGTGTTAAAGAACAAATAAATGCAATAAAT CCAATCAATAACATTAGTAAGAAGGTTATTAAGTGGCTACTTAGAATAATCTCGGCTATGGTTATTATAA TCAGAAACTCCTCTGACCCTCAAACGATCATAGCAACCTTGACACTAATTGGTTGCAATGGTTCACCATG GAGATTTCTCAAAGAAAAGTTTTGCAAATGGACCCAATTAACTTATATCCACAAAGAGTCTGATTCATGG CTTAAGAAATTCACTGAAATGTGTAATGCTGCACGTGGTCTTGAATGGATTGGTAATAAAATTTCAAAAT TTATAGATTGGATGAAATCTATGCTACCCCAGGCCCAATTGAAAGTTAAATACTTGAATGAAATAAAGAA ACTCAGTTTGCTTGAAAAACAGATTGAAAATCTACGTGCGGCAGATAGTGCAACACAAGAGAAAATCAAA TGTGAAATTGACACCCTACATGATCTATCGTGCAAATTTCTTCCTTTGTATGCACATGAGGCAAAAAGAA TCAAAGTGCTTTATAATAAATGTTCCAATATAATTAAACAAAGAAAGAGAAGTGAACCGGTGGCGGTGAT GATACATGGACCACCCGGTACTGGTAAATCTATAACAACTAACTTCTTGGCTAGAATGATAACAAATGAA AGTGATGTGTACTCATTACCTCCAGATCCCAAATATTTTGATGGTTATGACAATCAGAGTGTTGTAATCA TGGATGATATTATGCAAAATCCAGATGGAGAAGACATGACACTATTTTGCCAAATGGTTTCAAGTGTTAC ATTTATACCACCCATGGCTGATTTGCCTGACAAGGGTAAACCATTTGATTCAAGATTTATCTTATGTAGT ACTAACCACTCGCTTTTAGCCCCACCTACTATATCTTCATTACCCGCAATGAATAGAAGATTTTTCTTTG ACTTAGATATTGTAGTTCATGACAATTATAAAGATACACAAGGGAAATTAGATGTATCCAAAGCTTTTCG ACCTTGTAATGTTAACACCAAAATTGGCAATGCAAAATGTTGTCCATTTGTATGTGGTAAGGCAGTGWCA TTCAAAGATCGCAGCACTTGCTCAACATACACCTTAGCTCAAGTTTACAATCACATTTTGGAAGAAGACA AAAGAAGGAGACAGGTGGTGGATGTCATGTCTGCAATTTTCCAAGGACCAATTTCTTTAGACGYTCCACC ACCACCAGCTATAGYAGATCTGTTACAATCAGTTAGAACACCTGAGGTAATCAAGTACTGTCAAGATAAT AAATGGGTCATTCCAGCAGAGTGCCAAGTGGAAAGAGACTTAAATATAGCCAATAGCATAATAGCTATTA TAGCAAATATAATAAGTATAGCTGGCATTATATTTGTAATTTATAAATTGTTTTGTTCATTACAAGGACC ATACTCAGGTGAACCTAAACCTAAAACCAAAGTACCTGAAAGAAGAGTAGTTGCTCAAGGTCCAGAAGAA GAATTTGGAAGGTCAATTCTCAAAAACAATACTTGTGTGATTACTACAGGTAATGGAAAATTTACAGGTC TTGGTATACATGACAGAATTCTAATCATCCCAACACATGCTGATCCAGGTAGAGAGGTCCAAGTTAATGG TGTCCACACTAAGGTTCTAGACTCATATGATCTTTATAATAGAGATGGAGTTAAACTTGAAATAACGGTC ATACAATTAGATAGAAATGAAAAATTTAGGGACATTAGAAAGTATATACCTGAAACAGAAGACGATTATC CAGAATGCAATTTGGCACTTTCAGCTAATCAAGATGAACCAACTATAATTAAAGTAGGAGATGTAGTGTC CTATGGCAATATTTTGCTTAGTGGAAATCAAACAGCCAGAATGCTTAAATATAATTACCCCACAAAATCA GGGTATTGTGGAGGGGTACTATATAAAATTGGTCAAATTCTAGGTATTCATGTGGGTGGAAATGGAAGGG ATGGTTTTTCAGCTATGTTACTTAGATCATACTTTACAGATACTCAGGGCCAAATTAAAGTCAATAAGCA TGCTACTGAATGTGGTCTTCCAACTATACACACTCCTAGCAAAACCAAACTTCAGCCTAGTGTATTTTAT GATGTCTTCCCAGGCTCTAAGGAACCAGCTGTGCTCACAGATAATGACCCTAGATTGGAAGTTAATTTTA AAGAAGCTTTATTTTCTAAATATAAAGGTAATGTGGAATGTAATTTGAATGAACATATGGAAATTGCTAT TGCCCATTACTCAGCACAATTAATGACACTAGATATTGATTCCAGGCCAATAGCATTGGAAGATAGCGTG TTTGGGATAGAAGGACTTGAGGCTTTAGATCTAAACACCAGTGCAGGGTTTCCTTATGTCACAATGGGTA TTAAAAAGAGAGATTTAATAAATAACAAAACAAAAGATATATCCAGGCTTAAAGAGGCTCTAGATAAATA TGGAGTTGACTTACCCATGATCACTTTCTTAAAAGACGAGCTTAGGAAAAAGGAGAAAATTTCAACAGGT AAAACTAGAGTTATAGAAGCAAGTAGTATAAATGACACAATATTATTTAGAACTACTTTTGGCAATTTGT TCTCTAAGTTTCATTTAAACCCAGGCGTTGTTACTGGCTCTGCAGTAGGGTGTGACCCTGAGACTTTCTG GTCTAAAATCCCAGTTATGCTTGATGGAGATTGTATAATGGCTTTTGACTATACAAATTATGATGGTAGT ATACACCCTGTCTGGTTTCAAGCTCTGAAAAAAGTTCTTGAAAATTTATCTTTCCAATCTAATTTAATTG ATAGATTGTGTTATTCCAAGCACTTGTTTAAATCAACATATTATGAAGTGGCAGGTGGAGTTCCTTCTGG GTGTTCTGGAACCAGTATATTCAATACTATGATTAATAACATTATAATAAGAACACTAGTTCTAGATGCA TACAAAAATATTGATCTGGACAAGCTTAAAATAATTGCATATGGTGATGATGTGATTTTCTCTTATAAAT ATACTCTAGATATGGAAGCTATTGCTAATGAAGGAAAGAAATATGGACTTACAATAACACCAGCAGATAA GTCCAATGAATTCAAGAAACTTGATTATAGTAATGTGACTTTTCTTAAACGTGGTTTTAAGCAAGATGAA AGACATACATTCCTTATTCATCCTACATTCCCAGTGGAAGAGATACATGAATCAATTAGATGGACCAAGA AACCTTCACAGATGCAAGAACATGTGCTATCATTATGTCACCTGATGTGGCACAATGGACGTAAGGTGTA TGAAGATTTCTCTAGTAAGATACGCAGTGTCAGCGCTGGACGTGCACTGTATATCCCACCTTATGATCTG TTGAAACATGAATGGTATGAAAAATTTTAGATATAGAAATAATGAATGAATGATTCTTTAATTCTAT
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