Virus General Information

  Virus Name
Human rhinovirus (HRV)
  Strains
(strain 16)
  Lineage
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Ensavirinae; Enterovirus; Rhinovirus A
  Virus Molecule Type
ssRNA(+)
  Sequence ID
LC699418.1
  Genome Type
Non-segmented
  Related Host Homo sapiens
  External Link
 Taxon ID 31708
 Virus-Host DB https://www.genome.jp/virushostdb/31708

Virus Virion and Genome Information

    Virion Information
Non-enveloped, spherical, about 30 nm in diameter, T=pseudo3 icosahedral capsid surrounding the naked RNA genome. The capsid consists of a densely-packed icosahedral arrangement of 60 protomers, each consisting of 4 polypeptides, VP1, VP2, VP3 and VP4. VP4 is located on the internal side of the capsid.
    GENOME Information
Monopartite, linear ssRNA(+) genome of 7.2-8.5 kb, polyadenylated, composed of a single ORF encoding a polyprotein. Viral genomic RNA has a viral protein (VPg) at its 5' end instead of a methylated nucleotide cap structure. The long UTR at the 5' end contains a type I internal ribosome entry site (IRES). The P1 region encodes the structural polypeptides. The P2 and P3 regions encode the nonstructural proteins associated with replication.

Virus-RNA -- Host-Protein Interaction

RNA Binding Site RNA Detail Protein Name Host Species Uniprot ID Protein Detail
5'UTR - 3'UTR RNA Info Heterogeneous nuclear ribonucleoprotein D0 Homo sapiens Q14103 Pro Info

Virus Sequence Information

>LC699418.1 Rhinovirus A16 HRV_A16_Fukushima_H561_2019 genomic RNA, complete genome TAAAACTGGATCTGGGTTGTTCCCACCCAGATCACCTACATGGTGTTGTACACTATTATTACGGTAATTT TGTACGCCAGTTTTATATCCCCTTCCCTTAATGTAACTTAGAAGCAAAGCAAACCGATCAATAGGGGACA ATCATCCAGATTGTCAAAGATCAAGCACTTCTGTTTCCCCGGTCAAAGTTGATATGCTCCACAAGGGCAA AAACAACTGAGATCGTTATCCGCAAGATGCCTACGCAAAGCCTAGTAACATATTGAAAGATACTTGGTTG GTCGCTCAGCTGTTAACCCAACAGTAGACCTGGCAGATGAGGCTAGAGATTCCCCTCCGGCGACGGAGTT CTAGCCTGCGTGGCTGCCTGCACACCCTTTGGGTGTGAAGCCAAATATTGGACAAGGTGTGAAGAGCCAC GTGTGCTCATCTTGAGTCCTCCGGCCCCTGAATGTGGCTAACCTTAAACCTGCAGCCAGTGCACACAATC CAGTGTGTAGCTGGTCGTAATGAGCAATTGCGGGATGGGACCAACTACTTTGGGTGTCCGTGTTTCACTT TTTCCTTTTATTATTGCTTATGGTGACAATATATATAGCATATATATATTGTTATCATGGGCGCCCAAGT ATCCAGACAGAACGTTGGTACGCACTCAACACAAAATATGGTGTCAAATGGATCCAGTCTCAATTATTTT AACATCAATTATTTTAAAGATGCAGCCTCCAGTGGTGCTTCTCGATTGGACTTTTCTCAAGATCCTAGTA AGTTCACAGACCCAGTTAAGGATGTATTGGAGAAAGGCATACCCACGTTGCAATCTCCAAGTGTAGAGGC TTGTGGATACTCAGACAGAATAATCCAAATTACAAGAGGTGATTCAACCATAACATCTCAAGATGTTGCT AATGCAGTGGTTGGATATGGGGTGTGGCCGCACTATTTAACCCCACAAGATGCAACTGCTATAGATAAAC CAACACAACCAGATACATCATCAAATAGATTTTACACACTAGACAGTAAAATGTGGAGTGGCACCTCTAA AGGTTGGTGGTGGAAATTACCAGATGCTCTTAAAGACATGGGTATTTTTGGTGAAAATATGTTCTATCAC TTCCTGGGTAGAAGCGGGTATACAGTGCATGTGCAATGCAATGCAAGCAAATTCCATCAGGGTACATTAC TGGTGGTTATGATACCAGAACATCAACTAGCAACAGTAAATAAAGGAAATGTCAATGCAGGATACAAATA CACACATCCTGGAGAAGCTGGTAGAGAGGTGGGGACTCAAGTTGAAAACGAAAAGCAACCTAGTGATGAT AATTGGCTAAATTTTGATGGTACATTAATGGGCAATTTGCTAATATTCCCACACCAGTTTATTAATTTAA GGAGCAATAATTCAGCAACACTCATAGTGCCATATGTAAATGCTGTTCCAATGGATTCTATGGTTAGACA TAACAACTGGAGTTTGGTTATAATACCTGTATGTCAATTACAAAGTAACAACGTGTCTAACATTGTTCCT ATTACTGTTTCTATCAGTCCAATGTGTGCTGAATTTTCTGGAGCACGTGCAAAAACAGTTGTACAGGGTT TACCAGTGTATGTCACACCAGGGTCAGGGCAGTTTATGACAACAGATGATATGCAGTCTCCATGTGCATT ACCTTGGTATCATCCAACAAAAGAGATCTTTATACCAGGGGAGGTTAAGAACTTGATTGAGATGTGTCAA GTAGACACACTCATACCAATAAACAGCACACAGGCAAATATTGGCAATGTCAATATGTATACAGTAACTT TATCACCACAAACAAGATTGGCTGAAGAAATTTTTGCAATTAAAGTAGATATTGCCTCACATCCCTTGGC CACAACTCTTATTGGTGAAATAGCAAGTTACTTTACACACTGGACAGGTAGCTTGCGATTCAGTTTCATG TTTTGTGGGACTGCAAACACCACCCTAAAAGTCTTGTTAGCATATACACCCCCAGGGATTGGCAAACCTA GAAATAGAAAGGAAGCAATGTTAGGGACACATGTGGTATGGGATGTAGGTTTGCAGTCTACAGTATCATT GGTTGTACCATGGATCAGTGCCAGCCAATACAGATTCACTACACCAGATACATACTCTTCAGCAGGTTAC ATCACATGTTGGTATCAAACTAACTTTGTTGTTCCACCAAACACACCCAATTCTGCTGAAATGTTATGTT TTGTTTCAGGATGTAAAGATTTTTGTCTCCGGATGGCAAGAGATACAGATCTGCACAAGCAAACAGGCCC AATAACACAAAACCCAGTGGAAAGATATGTGGATGAAGTCTTAAATGAGGTATTGGTGGTACCCAATATT AATGAGAGTCACCCGTCCACATCAAATGCAGCCCCAGTTTTGGATGCTGCCGAAACAGGACATACTAATA AGATACAGCCAGAAGATACCATAGAAACCAGGTATGTACAATCATCTCAAACATTAGATGAAATGAGTGT AGAAAGTTTCTTAGGTAGATCAGGGTGCATCCATGAATCAGTGTTAGACATTGTAGATAATTACGATGAT CAAAGCTTTACTAAATGGAAGATAAACCTACAGGAAATGGCTCAAATTAGAAGGAAATTTGAAATGTTTA CTTATACAAGATTTGACTCAGAAATCACTATGGTACCAAGTGTAGCAGGCAAAGAAGGCCACATTGGTCA CATAGTCATGCAATATATGTATGTACCCCCAGGAGCACCCATACCAACAACTAGAGATGATTACGCTTGG CAATCTGGAACAAATGCATCTGTATTTTGGCAGCATGGACAACCTTTCCCTCGTTTTTCACTCCCTTTTC TAAGTATTGCTTCAGCATATTACATGTTTTATGATGGTTATGATGGGGACACATACAAGTCTAGGTACGG AACAGTAGTCACTAACGATATGGGAACTTTGTGTTCACGTATTGTGACTAGTGAACAATTACACAAAGTC AAGGTGGTAACAAGGATATATCACAAAGCCAAACACACCAAAGCTTGGTGTCCAAGGCCACCTAGAGCTG TTCAGTACTCGCACACACACACTACCAACTACAAATTGAGCACAGAAGTACACAATGATGTGGCTATAAG ACCCAGAACAAATTTAACAACTGTTGGACCTAGTGACATGTATGTACATGTTGGTAATCTGATATATAGA AATCTACATTTGTTCAACTCTGACATGCATGATTCTATTTTAGTATCCTACTCATCAGATTTAGTCATAT ACCGAACAAATACACAAGGTGATGACTATATTCCAACATGCAACTGTACTGAGGCCACATATTTCTGCAA GCACAAGAATAGATACTATCCAATTAGTGTTACACCCCATGACTGGTATGAGATACAAGAGAGTGAATAT TATCCAAAACACATCCAATACAATCTATTAATAGGTGAGGGACCATGTGAACCAGGTGATTGTGGTGGGA AATTACTATGCAAACATGGAGTGATAGGAATCATTACAGCTGGTGGTGAAGGTCATGTTGCTTTCATAGA TCTTAGGCATTTCCATTGTGCTGAAGAACAAGGAATTACTGACTACATACACATGCTTGGTGAAGCTTTT GGTAGCGGTTTTGTGGATAGTGTTAAGGACCAGATTAACTCAATAAATCCTATCAATAATATTAGTAGTA AGATGGTCAAGTGGATGTTAAGAATTATATCAGCTATGGTTATAATCATTAGGAACTCTTCAGATCCACA AACAATAATTGCCACTTTAACACTAATTGGATGTAGTGGTTCACCTTGGAGATTTCTCAAAGAAAAATTT TGTAAGTGGACTCAATTGACTTACATACACAAAGAATCAGATTCATGGCTTAAGAAGTTTACTGAAATGT GCAATGCGGCTAGGGGGCTGGAATGGATTGGAAACAAAATATCCAAATTTATTGATTGGATGAAATCAAT GTTACCTCAGGCACAACTAAAAGTCAAATATTTAAGTGAACTTAAGAAACTTAACTTTCTGGAGAAGCAA GTTGAAAATCTCAGAGCAGCTGACACCAACACCCAGGAAAAAATCAAGTGTGAGATAGATACTCTACATG ACTTATCCTGCAAATTCTTGCCTCTATATGCTAGTGAAGCAAAAAGAATTAAAGTGCTGTATCATAAATG TAATAATATAATCAAACAAAAGAAGAGGAGTGAGCCTGTGGCAGTCATGATACATGGGCCTCCTGGAACT GGGAAATCAATCACTACAAGTTTCCTAGCTAGAATGATTACCAATGAGAGTGACATATACTCACTTCCTC CAGACCCTAAATATTTTGATGGCTATGACAATCAGAGTGTAGTGATAATGGATGACATCATGCAGAACCC TGGTGGTGAGGATATGACATTATTCTGTCAAATGGTATCCAGTGTGACTTTCATACCCCCAATGGCTGAT CTACCAGATAAGGGAAAGCCCTTTGACTCTAGATTTGTATTGTGTAGTACTAATCATTCACTCTTGGCAC CCCCAACCATATCATCACTTCCAGCAATGAATAGGAGGTTCTACTTGGATTTGGATATTCTTGTACATGA CAACTATAAAGATAATCAAGGGAAATTAGATGTCTCCAGAGCATTTCAACTATGTGATGTTGATTCAAAG ATTGGAAATGCAAAATGTTGTCCATTTGTGTGTGGTAAGGCAGTGACATTTAAGGACCGAAATACATGTA AAACTTATTCACTTTCTCAAATATACAACCAAATTCTTGAGGAAGATAAGAGAAGGAGACAAGTAGTTGA TGTCATGTCTGCAATTTTCCAGGGACCCATATCAATGGACAAACCCCCACCACCAGCTATAACAGATCTT TTACGCTCAGTGAGGACACCAGAAGTAATCAAGTATTGTCAGGACAATAAATGGATAGTTCCTGCAGATT GTCAAATTGAAAGGGATTTGAACATAGCTAACAGTATAATTACAATTATAGCTAATATTATTAGTATAGC AGGAATCATATATATAATATACAAACTTTTTTGCTCTCTACAAGGCCCATACTCAGGGGAACCCAAGCCA AAAACAAAAATCCCTGAGAGAAGAGTGGTGGCTCAAGGTCCAGAAGAAGAATTTGGAATGTCTATTATCA GAAACAATACTTGTGTTGTGACTACTACAAATGGAAAATTCACAGGATTAGGCATTTATGACAGGGTTTT AATATTGCCAACACATGCTGACCCAGGCAGTGAAATTCAAGTGAATGGGATACACACCAAAGTACTTGAC TCCTATGACTTATTTAATAAAGAAGGTGTTAAACTAGAAATTACTGTGTTAAAATTAGACAGAAATGAAA AATTCAGGGACATACGTAAGTATATACCTGAATCAGAAGATGATTATCCCGAATGCAATTTAGCACTTGT TGCCAATCAAACAGAACCAACTATAATTAAAGTGGGAGATGTTGTATCTTATGGTAATATATTACTCAGT GGCACACAAACAGCTAGAATGCTTAAGTATAACTACCCTACAAAATCTGGATATTGTGGTGGTGTGTTGT ATAAGATTGGCCAGATCTTGGGCATACATGTAGGTGGTAATGGTAGAGATGGATTCTCATCTATGCTGTT GAGATCATATTTTACTGAACAACAAGGCCAAATTCAAATCTCTAAACATGTTAAAGACATCGGTCTACCT TCAATACACACACCAACTAAAACCAAATTACAGCCAAGTGTCTTCCATGATGTTTTCCCAGGAAGTAAAG AACCAGCTGTCCTTACAGATAAAGATCCTAGATTAGAAGTAGACTTTAACACAGCCCTTTTTTCAAAGTA CAAAGGCAATGCAGATTGTAGTCTGAATGAGCACATACAGGTTGCAGTGGCACATTACTCAGCTCAATTA GCAACACTAGATATAGATCCACAGCCAATCGCAATGGAAGATAGTGTTTTTGGAATGGATGGCTTGGAGG CTTTGGATCTAAACACCAGTGCAGGCTACCCCTATGTAACACTAGGAATCAAGAAGAAAGATCTTATCAA TAATAAGACAAAAGACATTTCTAAACTTAAACTAGCATTAGACAAATATGGTGTTGATTTGCCCATGATT ACTTTCTTAAAAGATGAACTCAGGAAGAAGGATAAGATAGTAGCAGGTAAGACTAGGGTCATAGAAGCTA GTAGTATAAATGATACTATCTTATTTAGGACAGTTTATGGAAACCTATTTTCCAAATTTCATTTGAATCC AGGGGTTGTAACAGGATGCGCTGTCGGGTGTGACCCAGAGACCTTCTGGTCCAAAATTCCCCTAATGTTA GATGGAGATTGCATTATGGCTTTTGACTACACAAATTATGATGGTAGTATCCACCCAGTTTGGTTTAAAG CTCTTGGGATGGTGCTTGACAATTTATCCTTTAACCCTACCTTGATTAACAGACTCTGTAATTCAAAGCA TATTTTTAAATCTACTTATTATGAAGTTGAAGGTGGTGTACCCTCTGGTTGCTCAGGAACTAGTATATTT AACTCAATGATTAATAACATAATTATAAGAACCTTAGTTTTGGATGCTTACAAGCATATTGATTTAGATA AGCTAAAGATAATTGCTTATGGTGATGATGTAATTTTCTCCTACAAGTATAAATTAGACATGGAAGCCAT AGCTAAGGAAGGACAAAAGTATGGACTTACCATAACACCTGCAGACAAATCCAGTGAATTCAAAGAACTT GATTATGGGAATGTAACATTTCTAAAAAGAGGTTTTAGGCAAGATGACAAATATAAATTCTTGATACATC CTACTTTTCCAGTTGAAGAGATTTATGAGTCCATCAGATGGACGAAGAAACCATCTCAAATGCAGGAACA TGTCTTGTCTTTGTGTCACTTAATGTGGCACAATGGTCCTGAGATTTATAAGGACTTTGAAGCAAAGATA CGCAGTGTTAGCGCTGGACGTGCACTGTATATCCCTCCTTATGAACTCCTAAGACATGAGTGGTATGAAA AATTTTAGATATAGAATTAATAAATGAGCAGTTTGTTAGTTTTATAAAAAAAAAAAAAAAAAAAAAAAAA AAAAAAAAAA
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