Virus General Information

  Virus Name
Encephalomyocarditis virus (EMCV)
  Lineage
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Picornavirales; Picornaviridae; Caphthovirinae; Cardiovirus; Cardiovirus A
  Virus Molecule Type
ssRNA(+)
  Sequence ID
NC_001479.1
  Genome Type
Non-segmented
  Related Host Homo sapiens
  External Link
 Taxon ID 12104
 Virus-Host DB https://www.genome.jp/virushostdb/12104
 KEGG BRITE ID NC_001479

Virus Virion and Genome Information

    Virion Information
Non-enveloped, spherical, about 30 nm in diameter, T=pseudo3 icosahedral capsid surrounding the naked RNA genome. The capsid consists of a densely-packed icosahedral arrangement of 60 protomers, each consisting of 4 polypeptides, VP1, VP2, VP3 and VP4. VP4 is located on the internal side of the capsid.
    GENOME Information
Monopartite, linear ssRNA(+) genome of 7.8 kb, polyadenylated, composed of a single ORF encoding a polyprotein. Viral genomic RNA has a viral protein (VPg) at its 5' end instead of a methylated nucleotide cap structure. The long UTR at the 5' end contains a type II internal ribosome entry site (IRES). The P1 region encodes the structural polypeptides. The P2 and P3 regions encode the nonstructural proteins associated with replication. Encodes a unique protease 3C. The leader (L) protein is thought to exert important functions in virus-host interactions. The shorter 3' UTR is important in (-)strand synthesis.

Virus-RNA -- Host-Protein Interaction

RNA Binding Site RNA Detail Protein Name Host Species Uniprot ID Protein Detail
5'UTR - 3'UTR RNA Info 14-3-3 protein eta Homo sapiens Q04917 Pro Info
5'UTR - 3'UTR RNA Info 14-3-3 protein gamma Homo sapiens P61981 Pro Info
5'UTR - 3'UTR RNA Info 26S proteasome regulatory subunit 10B Homo sapiens P62333 Pro Info
5'UTR - 3'UTR RNA Info 28S ribosomal protein S5 Homo sapiens P82675 Pro Info
5'UTR - 3'UTR RNA Info 28S ribosomal protein S7 Homo sapiens Q9Y2R9 Pro Info
5'UTR - 3'UTR RNA Info 3-oxoacyl-[acyl-carrier-protein] reductase Homo sapiens Q8N4T8 Pro Info
5'UTR - 3'UTR RNA Info 39S ribosomal protein L11 Homo sapiens Q9Y3B7 Pro Info
5'UTR - 3'UTR RNA Info 39S ribosomal protein L12 Homo sapiens P52815 Pro Info
5'UTR - 3'UTR RNA Info 39S ribosomal protein L24 Homo sapiens Q96A35 Pro Info
5'UTR - 3'UTR RNA Info 4-trimethylaminobutyraldehyde dehydrogenase Homo sapiens P49189 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S14 Homo sapiens P62263 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S15 Homo sapiens P62841 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S2 Homo sapiens P15880 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S25 Homo sapiens P62851 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S3a Homo sapiens P61247 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein S4 Homo sapiens P62701 Pro Info
5'UTR - 3'UTR RNA Info 40S ribosomal protein SA Homo sapiens P08865 Pro Info
5'UTR - 3'UTR RNA Info 60S ribosomal protein L28 Homo sapiens P46779 Pro Info
5'UTR - 3'UTR RNA Info A-kinase anchor protein 8 Homo sapiens O43823 Pro Info
5'UTR - 3'UTR RNA Info Acrosomal protein KIAA1210 Homo sapiens Q9ULL0 Pro Info

Virus Sequence Information

>NC_001479.1 Encephalomyocarditis virus, complete genome TTGAAAGCCGGGGGTGGGAGATCCGGATTGCCAGTCTGCTCGATATCGCAGGCTGGGTCCGTGACTACCC ACTCCCCCTTTCAACGTGAAGGCTACGATAGTGCCAGGGCGGGTACTGCCGTAAGTGCCACCCCAAAATA ACAACAGACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCTCCCTCCCCCCCCCC TAACGTTACTGGCCGAAGCCGCTTGGAATAAGGCCGGTGTGCGTTTGTCTATATGTTATTTTCCACCATA TTGCCGTCTTTTGGCAATGTGAGGGCCCGGAAACCTGGCCCTGTCTTCTTGACGAGCATTCCTAGGGGTC TTTCCCCTCTCGCCAAAGGAATGCAAGGTCTGTTGAATGTCGTGAAGGAAGCAGTTCCTCTGGAAGCTTC TTGAAGACAAACAACGTCTGTAGCGACCCTTTGCAGGCAGCGGAACCCCCCACCTGGCGACAGGTGCCTC TGCGGCCAAAAGCCACGTGTATAAGATACACCTGCAAAGGCGGCACAACCCCAGTGCCACGTTGTGAGTT GGATAGTTGTGGAAAGAGTCAAATGGCTCTCCTCAAGCGTATTCAACAAGGGGCTGAAGGATGCCCAGAA GGTACCCCATTGTATGGGATCTGATCTGGGGCCTCGGTGCACATGCTTTACATGTGTTTAGTCGAGGTTA AAAAACGTCTAGGCCCCCCGAACCACGGGGACGTGGTTTTCCTTTGAAAAACACGATGATAATATGGCCA CAACCATGGAACAAGAGACTTGCGCGCACTCTCTCACTTTTGAGGAATGCCCAAAATGCTCTGCTCTACA ATACCGTAATGGATTTTACCTGCTAAAGTATGATGAAGAATGGTACCCAGAGGAGTTATTGACTGATGGA GAGGATGATGTCTTTGATCCCGAATTAGACATGGAAGTCGTTTTCGAGTTACAGGGCAATTCCACCTCCT CAGACAAGAATAACTCCTCCTCGGAAGGCAATGAAGGTGTGATCATCAATAACTTTTACTCCAACCAATA TCAAAACTCCATTGACCTCTCTGCTAATGCAGCCGGGTCTGACCCACCCAGAACCTACGGTCAATTTTCG AATCTCTTTTCGGGCGCAGTGAATGCCTTTTCTAATATGCTTCCATTGCTAGCTGATCAAAATACAGAAG AAATGGAGAATCTGTCTGATCGAGTGTCTCAAGACACTGCCGGCAATACGGTCACAAACACCCAGTCAAC AGTGGGCCGTCTTGTCGGTTATGGTACCGTTCATGATGGAGAGCATCCGGCATCATGTGCTGACACTGCT TCAGAAAAGATCCTGGCGGTGGAAAGGTACTACACCTTCAAGGTTAATGATTGGACATCAACACAAAAGC CCTTTGAGTACATCCGCATTCCCCTTCCTCACGTCCTGTCCGGTGAAGATGGTGGTGTCTTTGGTGCGGC CCTCCGCCGGCACTACCTGGTGAAAACTGGATGGCGGGTGCAAGTTCAGTGCAACGCCTCTCAATTCCAC GCTGGAGGTTTGCTGGTGTTCATGGCACCAGAGTATCCAACCTTAGATGCTTTTGCCATGGACAACCGTT GGTCCAAGGATAACCTGCCTAATGGAACCAGAACTCAGACAAACAAAAAGGGACCATTTGCCATGGACCA TCAGAACTTCTGGCAGTGGACCTTGTATCCCCATCAATTCCTGAATCTGAGAACTAACACCACAGTGGAT CTTGAGGTGCCATATGTAAACATAGCCCCCACTTCCTCCTGGACACAACATGCTTCCTGGACTTTGGTGA TTGCAGTGGTTGCTCCCCTGACATACTCAACCGGGGCTTCTACCAGTTTGGATATCACCGCTTCTATTCA GCCAGTAAGGCCTGTCTTTAATGGCCTCCGGCATGAGACACTTTCTAGACAGTCGCCCATTCCGGTCACA ATTAGAGAACATGCTGGTACCTGGTATTCTACTCTGCCAGACAGCACAGTGCCTATTTATGGCAAGACTC CTGTTGCTCCATCCAATTACATGGTAGGCGAATACAAGGACTTCCTGGAGATAGCTCAGATTCCAACCTT TATTGGGAATAAGATCCCTAATGCTGTCCCCTACATTGAGGCATCCAACACAGCCGTCAAGACCCAACCG CTGGCCACCTATCAAGTGACCTTGTCCTGCTCCTGTCTGGCCAATACATTCTTGGCCGCTTTGTCTAGAA ACTTTGCTCAGTACCGGGGATCATTGGTTTATACCTTTGTGTTCACTGGGACCGCGATGATGAAGGGCAA GTTCCTCATTGCCTACACCCCACCTGGAGCGGGCAAGCCCACTAGTCGAGACCAAGCCATGCAGGCGACT TATGCGATTTGGGATTTGGGGCTAAATTCTTCTTACTCCTTCACTGTGCCTTTTATTTCTCCCACTCACT TCCGCATGGTAGGTACTGACCAAGTCAACATCACTAATGCGGATGGCTGGGTTACCGTGTGGCAGCTCAC TCCCCTCACTTACCCACCAGGATGCCCGACCTCTGCTAAGATACTAACAATGGTGAGCGCAGGGAAGGAT TTCTCACTCAAGATGCCTATCTCACCTGCCCCCTGGAGCCCTCAGGGAGTAGAAAACGCTGAAAAAGGGG TCACTGAAAACACAAACGCAACTGCTGACTTTGTGGCTCAACCAGTTTACTTGCCTGAGAACCAAACGAA GGTGGCTTTCTTCTATAATAGGTCCAGTCCCATTGGTGCCTTCACCGTGAAGTCCGGCAGTCTAGAATCT GGTTTTGCCCCGTTCTCTAATGGGACTTGCCCGAACTCAGTGATACTGACCCCTGGGCCCCAATTTGACC CCGCCTATGACCAACTCAGGCCACAGCGTCTGACAGAAATTTGGGGCAATGGAAATGAGGAGACCTCAAA AGTCTTTCCGCTTAAATCCAAACAGGATTATTCCTTCTGCCTCTTCTCCCCCTTTGTGTATTATAAATGT GATTTAGAAGTGACTCTTAGTCCTCACACTTCAGGCAACCATGGGCTGTTGGTGAGGTGGTGTCCCACTG GTACACCAACCAAGCCCACTACCCAGGTTCTCCATGAAGTAAGTTCCCTCTCAGAAGGCAGAACCCCCCA GGTTTATAGTGCCGGACCTGGCATTTCAAATCAGATTTCCTTTGTAGTTCCTTACAATTCTCCACTTTCA GTCCTATCAGCTGTCTGGTATAATGGACACAAGAGATTTGACAACACTGGGAGCTTGGGCATTGCCCCTA ATTCTGATTTCGGCACTCTGTTCTTTGCTGGCACAAAGCCTGACATTAAATTCACAGTCTACTTGAGATA CAAGAATAAGAGAGTTTTTTGCCCACGTCCGACTGTCTTTTTCCCCTGGCCCACTTCCGGAGACAAGATT GATATGACCCCGAGAGCTGGAGTCTTGATGCTAGAGAGTCCAAATGCCCTAGACATTTCAAGAACATACC CCACGTTACATGTTCTCATTCAATTCAACCATAGAGGTTTGGAGGTTAGATTGTTTAGACATGGACACTT TTGGGCTGAAACACGTGCGGACGTGATTCTGAGATCAAAGACCAAACAGGTCTCTTTCCTGAGCAACGGG AACTACCCGTCAATGGACTCTAGAGCTCCCTGGAATCCTTGGAAGAATACCTACCAGGCGGTTCTAAGAG CAGAACCATGTAGAGTGACCATGGATATATATTATAAGAGAGTCAGGCCTTTTAGACTGCCCCTGGTTCA GAAGGAATGGCCCGTGCGAGAGGAGAACGTTTTCGGTTTGTACCGGATCTTCAATGCCCACTACGCTGGT TACTTTGCGGACCTACTGATTCATGACATTGAGACAAATCCAGGGCCCTTCATGTTTAGACCAAGGAAAC AGGTTTTCCAGACCCAAGGAGCGGCAGTGTCATCAATGGCTCAAACCCTACTGCCGAACGACCTTGCCAG CAAAGCTATGGGATCAGCTTTTACGGCTTTGCTCGATGCCAACGAGGACGCCCAAAAAGCAATGAAGATT ATAAAGACATTAAGTTCTCTATCGGATGCATGGGAAAATGTAAAAGAAACACTAAACAACCCAGAGTTCT GGAAGCAGCTCTTGAGCAGATGTGTGCAGCTGATTGCAGGGATGACAATAGCAGTGATGCATCCGGACCC TTTGACTCTGCTCTGCTTAGGAACATTGACGGCCGCCGAGATTACAAGCCAGACAAGTCTGTGCGAAGAA ATAGCAGCTAAGTTCAAGACAATTTTCATCACTCCTCCACCACGGTTTCCCACAATCTCTCTTTTCCAAC AACAATCCCCCTTGAAACAGGTAAATGATATTTTCTCCCTAGCCAAGAACCTGGACTGGGCCGTCAAGAC TGTGGAAAAGGTGGTTGATTGGTTTGGGACATGGATAGTACAGGAGGAAAAGGAACAGACCCTAGATCAG CTCTTGCAGCGTTTCCCCGAACATGCGAAGCGCATTTCTGATCTCCGGAATGGAATGGCCGCCTATGTAG AGTGCAAGGAGAGTTTTGATTTCTTTGAAAAGCTGTACAATCAGGCAGTGAAAGAGAAGAGAACGGGTAT CGCCGCCGTCTGTGAAAAATTCAGACAGAAGCATGACCACGCCACCGCTCGGTGTGAGCCAGTCGTGATT GTGCTCCGCGGAGACGCGGGGCAAGGGAAATCTTTATCAAGTCAGGTTATTGCCCAGGCCGTCTCCAAGA CCATTTTCGGCCGGCAATCTGTGTATTCCCTTCCCCCCGATTCGGATTTCTTTGATGGCTATGAAAATCA GTTTGCAGCAATAATGGATGATCTAGGGCAAAATCCTGATGGCTCTGATTTCACTACGTTCTGTCAGATG GTTTCGACTACCAATTTTCTCCCCAATATGGCTAGTCTAGAGAGAAAGGGCACCCCCTTTACATCTCAGC TTGTGGTGGCAACTACCAATCTGCCTGAGTTTAGACCTGTCACAATAGCCCATTACCCTGCTGTTGAGAG AAGGATAACTTTCGACTATTCAGTGTCTGCTGGTCCAGTCTGCTCCAAAACAGAGGCCGGGTATAAGGTT TTGGATGTTGAAAGAGCCTTTAGGCCTACCGGTGAGGCTCCTCTTCCATGCTTCCAGAATAACTGCCTTT TCCTTGAGAAAGCTGGGCTCCAGTTCAGAGATAACCGAACTAAAGAGATCATTTCCCTGGTAGATGTGAT TGAGAGAGCCGTGGCTAGGATTGAAAGGAAGAAGAAAGTTCTCACAACCGTGCAGACCCTTGTGGCACAA GGTCCAGTAGACGAGGTCAGTTTCCATTCCGTAGTCCAGCAGCTTAAAGCAAGACAGCAAGCGACAGATG AACAGCTTGAGGAATTGCAAGAGGCTTTCGCGAAAGTACAGGAGCGTAACTCTGTGTTTTCTGATTGGTT GAAGATTTCTGCAATGTTGTGTGCTGCGACTCTGGCACTTTCCCAAGTTGTCAAGATGGCCAAGGCGGTG AAGCAGATGGTCAAGCCTGATCTGGTTCGTGTGCAATTGGATGAGCAGGAGCAGGGACCTTACAATGAGA CAGCGAGAGTTAAACCAAAAACACTGCAGTTGTTGGACATTCAGGGACCAAACCCTGTGATGGACTTTGA AAAATATGTAGCCAAACATGTAACCGCCCCCATTGGTTTTGTCTACCCCACTGGGGTGAGCACCCAGACT TGCCTCCTTGTGAGAGGCCGCACCTTGGTAGTAAATAGACACATGGCCGAGTCTGACTGGACTTCCATAG TAGTGCGTGGAGTCACACACGCCCGCTCTACTGTTAAAATTTTGGCCATAGCTAAAGCAGGCAAAGAGAC TGACGTATCTTTCATCCGCCTCTCTTCTGGTCCTCTATTCAGAGACAATACATCCAAATTTGTCAAGGCT GGTGATGTACTTCCTACTGGTGCCGCTCCAGTCACGGGGATAATGAACACGGACATACCCATGATGTACA CAGGAACCTTCCTGAAAGCTGGTGTGTCAGTCCCAGTGGAAACCGGCCAGACCTTTAATCACTGTATTCA TTACAAGGCTAACACACGAAAGGGCTGGTGTGGATCAGCCCTACTGGCAGATCTTGGAGGAAGCAAGAAA ATCCTTGGCATCCATTCTGCTGGCTCTATGGGAATAGCCGCCGCCTCGATTGTGTCACAGGAGATGATTC GGGCGGTAGTGAATGCCTTTGAGCCACAGGGTGCTCTCGAGAGATTGCCAGATGGGCCCCGTATTCACGT ACCACGTAAAACAGCACTACGCCCCACCGTTGCCCGTCAAGTCTTCCAACCAGCATATGCCCCGGCTGTT CTATCGAAATTTGACCCTAGAACAGAGGCTGATGTAGATGAAGTGGCTTTCTCCAAACATACCTCCAACC AGGAAAGCCTCCCACCAGTGTTTAGAATGGTAGCCAAAGAGTATGCCAATAGAGTTTTCACCTTGCTGGG AAAAGACAATGGCCGTCTGACTGTAAAGCAGGCTTTGGAAGGACTGGAGGGGATGGACCCCATGGACAGG AACACCTCCCCGGGGCTTCCATATACTGCGCTAGGAATGCGCAGAACAGATGTCGTAGATTGGGAATCAG CCACCCTGATCCCGTTTGCGGCAGAAAGATTAAGAAAAATGAATGAAGGAGACTTTTCCGAAGTTGTCTA TCAAACATTCCTCAAGGATGAGCTTAGACCGATAGAGAAGGTTCAAGCCGCCAAGACACGGATTGTAGAT GTTCCACCATTTGAGCATTGCATTCTGGGTAGACAATTGTTGGGAAAGTTTGCATCAAAGTTCCAGACCC AACCGGGTCTGGAACTAGGATCAGCCATTGGATGTGACCCAGATGTACACTGGACTGCCTTCGGTGTCGC CATGCAAGGTTTTGAGCGTGTCTACGATGTGGACTACTCCAACTTTGATTCGACCCATTCGGTGGCAATG TTCCGCTTATTGGCTGAGGAATTTTTCACTCCAGAGAATGGTTTTGACCCCCTGACTAGAGAATATCTTG AGTCATTAGCCATTTCAACCCATGCGTTTGAGGAGAAGCGCTTTCTGATAACCGGTGGTCTCCCATCAGG TTGTGCAGCGACCTCAATGCTAAACACTATAATGAATAATATAATAATTAGGGCGGGTTTGTATCTCACG TATAAAAATTTTGAATTTGATGATGTGAAGGTGTTGTCGTACGGAGATGATCTCCTTGTGGCCACAAATT ACCAATTGGATTTTGATAAGGTGAGAGCAAGCCTCGCAAAGACAGGATATAAGATAACTCCCGCTAACAC AACTTCTACCTTTCCTCTTAATTCGACGCTTGAAGACGTTGTCTTCTTAAAAAGAAAGTTTAAGAAAGAG GGCCCTCTGTATCGGCCTGTCATGAACAGAGAGGCGTTGGAAGCAATGTTGTCATACTATCGTCCAGGGA CTCTATCTGAGAAACTCACTTCGATCACTATGCTTGCCGTTCATTCTGGCAAGCAGGAATATGATCGGCT CTTTGCCCCATTCCGTGAGGTAGGGGTTGTCGTGCCATCATTCGAGAGTGTGGAGTACAGATGGAGGAGT CTGTTCTGGTAGTAGTGTAGTCACTGGCACAACGCGTTACCCGGTAAGCCAATCGGGTATACACGGTCGT CATACTGCAGACAGGGTTCTTCTACTTTGCAAGATAGTCTAGAGTAGTAAAATAAATAGATAGAG
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