Details of Virus RNA

  Strain Information Strain Name
Severe acute respiratory syndrome coronavirus 2 (strain hCoV-19/IPBCAMS-YL01/2020)
Strain Family
Coronaviridae
RNA Binding Site
5'UTR
  Virus Information Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Taxonomy ID 2697049

Full list of proteins interacting with the 5'UTR of this Strain

Protein Name Uniprot ID Host Species Pro Info Detection Method Infection Cell Cell ID Cell Originated Tissue Infection Time Interaction Score Fold Change
100 kDa coactivator Q7KZF4 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.963 .
ATP-dependent RNA helicase DDX42 Q86XP3 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.864 .
Cleavage stimulation factor subunit 2 P33240 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.973 .
E1B-55 kDa-associated protein 5 Q9BUJ2 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.95 .
Far upstream element-binding protein 2 Q92945 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.98 .
GAP-associated tyrosine phosphoprotein p62 Q07666 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.862 .
General transcription factor IIF subunit 1 (GTF2F1) P35269 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.95 .
Helicase MOV-10 Q9HCE1 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.92 .
Heterogeneous nuclear ribonucleoprotein A1 P09651 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.932 .
Heterogeneous nuclear ribonucleoprotein F P52597 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.945 .
Heterogeneous nuclear ribonucleoprotein K P61978 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.928 .
IGF2 mRNA-binding protein 1 Q9NZI8 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.983 .
IGF2 mRNA-binding protein 2 Q9Y6M1 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.894 .
IGF2 mRNA-binding protein 3 O00425 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.941 .
Interleukin enhancer-binding factor 3 Q12906 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.902 .
KH domain-containing RNA-binding protein QKI Q96PU8 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.859 .
NonO protein Q15233 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.87 .
Nucleolar protein 56 O00567 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.954 .
Nucleolysin TIA-1 isoform p40 P31483 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.935 .
Nucleolysin TIAR Q01085 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.947 .
Nucleophosmin P06748 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.93 .
Oxidative stress-associated Src activator Q9NZB2 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.891 .
Polypyrimidine tract-binding protein 1 P26599 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.899 .
pre-mRNA 3' end processing protein WDR33 Q9C0J8 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.983 .
Pre-mRNA-splicing factor RBM22 Q9NW64 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.959 .
Regulator of nonsense transcripts 1 Q92900 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.982 .
Ribosome maturation protein SBDS Q9Y3A5 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.94 .
RNA-binding protein 27 Q9P2N5 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.924 .
rRNA 2'-O-methyltransferase fibrillarin P22087 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.941 .
Splicing factor U2AF 65 kDa subunit P26368 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.882 .
TROVE domain family member 2 (TROVE2) A0A024R983 Homo sapiens Pro Info PrismNet; pull-down western (STAR methods); mass spectrometry Huh7.5.1 cells . Liver 30 h Affinity = 0.979 .