Details of Virus RNA

  Strain Information Strain Name
Severe acute respiratory syndrome coronavirus 2 (strain hCoV-19/Wuhan-Hu-1/2019)
Strain Family
Coronaviridae
RNA Binding Site
3'UTR
  Virus Information Virus Name
Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)
Taxonomy ID 2697049

Full list of proteins interacting with the 3'UTR of this Strain

Protein Name Uniprot ID Host Species Pro Info Detection Method Infection Cell Cell ID Cell Originated Tissue Infection Time Interaction Score Fold Change
Aldehyde dehydrogenase family 1 member A3 P47895 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 21 .
Ankyrin repeat and SOCS box protein 3 (ASB-3) Q9Y575 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 23 .
Ankyrin repeat-containing cofactor 2 (ANCO2) Q6UB98 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 20 .
ATP-dependent helicase 1 Q9H4L7 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 17 .
ATP-dependent RNA helicase DDX24 Q9GZR7 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 40 .
Basal cell adhesion molecule P50895 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 16 .
Bis(5'-adenosyl)-triphosphatase ENPP4 (E-NPP 4) Q9Y6X5 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 18 .
BTB/POZ domain-containing protein 7 (BTBD7) Q9P203 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 24 .
Cadherin-9 (CDH9) Q9ULB4 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 28 .
Calcium-binding mitochondrial carrier protein (SCaMC-1) Q6NUK1 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 26 .
Catenin alpha-3 (CTNNA3) Q9UI47 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 18 .
Class A basic helix-loop-helix protein 26 P61296 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 102 .
Coiled-coil domain-containing protein 25 (COL6A5) Q86WR0 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 16 .
Collagen alpha-5(VI) chain A8TX70 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 26 .
Conserved oligomeric Golgi complex subunit 4 (COG4) Q9H9E3 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 17 .
Cyclin-K (CCNK) O75909 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 22 .
Cytosolic phospholipase A2 (GIVA cPLA2) P47712 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 53 .
DNA polymerase theta (TRIM71) O75417 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 18 .
Dynein axonemal heavy chain 2 (EIF5B) Q9P225 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 33 .
FLICE-associated huge protein (FLASH) Q9UKL3 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 36 .
FYVE Q6ZV73 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 15 .
GPI ethanolamine phosphate transferase 2 (PIGG) Q5H8A4 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 18 .
GRAM domain-containing protein 4 (H2AC14) Q6IC98 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 29 .
Histone H3-K9 methyltransferase 5 (GLP) Q9H9B1 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 24 .
Homeobox protein DBX2 (DBX2) Q6ZNG2 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 26 .
HPK/GCK-like kinase HGK O95819 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 18 .
LIM domain and actin-binding protein 1 Q9UHB6 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 26 .
Lysine-specific demethylase 7A (KDM7A) Q6ZMT4 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 24 .
Lysine-specific demethylase PHF2 O75151 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 24 .
MaFF-interacting protein (DDX52) Q8WZ33 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 16 .
Microtubule-actin cross-linking factor 1 Q9UPN3 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 34 .
Microtubule-associated protein 1B P46821 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 22 .
mRNA-decapping enzyme 1B Q8IZD4 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 51 .
NAC-alpha domain-containing protein 1 (NACAD) O15069 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 44 .
Non-lysosomal glucosylceramidase (GBA2) Q9HCG7 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 27 .
Nuclear autoantigenic sperm protein (NASP) P49321 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 218 .
PDZ domain-containing protein 7 (PDZD7) Q9H5P4 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 13 .
Periodontal ligament-associated protein 1 (PLAP-1) Q9BXN1 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 24 .
Phospholipid-transporting ATPase VB (H1-5) O94823 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 39 .
Phospholipid-transporting ATPase VD (UTP11) Q9P241 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 39 .
Platelet endothelial cell adhesion molecule (PECAM1) P16284 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 24 .
Progesterone-induced-blocking factor 1 (PIBF1) Q8WXW3 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 23 .
Protein piccolo (PCLO) Q9Y6V0 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 27 .
Protocadherin Fat 4 (FAT4) Q6V0I7 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 38 .
Rab5 GDP/GTP exchange factor (ZNF711) Q9UJ41 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 24 .
RERG/Ras-like protein (RERGL) Q9H628 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 15 .
Rho GTPase-activating protein 23 Q9P227 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 16 .
Ribosomal protein S6 kinase beta-2 (RPS6KB2) Q9UBS0 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 24 .
RNA-binding protein 43 (RBM43) Q6ZSC3 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 18 .
SAC2 suppressor of actin mutations 2-like protein (VPS52) Q8N1B4 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 16 .
SCAN domain-containing protein 3 (PLAAT4) Q6R2W3 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 20 .
Serine/threonine-protein kinase pim-1 (PIM1) P11309 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 18 .
SH3 and PX domain-containing protein 2A Q5TCZ1 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 18 .
SH3 domain-binding protein 4 Q9P0V3 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 28 .
Syntrophin-3 (SNT3) Q13425 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 27 .
Testis-expressed protein 10 Q9NXF1 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 22 .
Testis-expressed protein 15 (TEX15) Q9BXT5 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 31 .
Testis-expressed protein 2 (TEX2) Q8IWB9 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 19 .
Toll-like receptor 3 O15455 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 31 .
TRAF2 and NCK-interacting protein kinase Q9UKE5 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 22 .
Transmembrane protein 200C (RASAL3) A6NKL6 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 29 .
TREK-2 K(+) channel subunit P57789 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 27 .
Treslin (TICRR) Q7Z2Z1 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 29 .
Tubulin alpha-1A chain Q71U36 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 536 .
UAP56-interacting factor Q96QD9 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 18 .
Uncharacterized protein KIAA1143 Q96AT1 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 29 .
UPF0415 protein C7orf25 (ZNF506) Q9BPX7 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 29 .
Vesicular glutamate transporter 2 (MAP4K4) Q9P2U8 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 29 .
WD repeat-containing protein 90 Q96KV7 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 26 .
Zinc finger protein 261 (ZMYM3) Q14202 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 18 .
Zinc finger protein 592 (HSP90AA2P) Q92610 Homo sapiens Pro Info RNA-protein interaction detection (RaPID) assay & liquid chromatography with tandem mass spectrometry (LC-MS/MS) HEK293T cells . Liver 48 h Prot score = 23 .